Ppla054134.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020193.1:24313121-24314907[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-08 2.1e-06 29.7 0.1 4 44 12 52 11 52 0.93
Sequence Information
- Coding Sequence
- ATGTCTAGAAAAATAGGATTATGGACTTCGGTCCAAATGGCGGAGGCATTGCAGGCCATAAAGAATGGAATGTTAACAAGAACCGCAGCTAAGCAATTTAACATTCCACGTCGCACGATAAGAAGTCACGTTTTAAGTGgaaaaacatcaaaaaaattTGGGCGACCTTCATGTTTAACACCTCAGCAGGAATCTGAGCTGTGCGGTAGAATTTTTAGGCTAGCGGATGTTGGGATGCCCTTAACATCAAAAGTAATAAGGCGCTCAGTGTATGAATTTTGCCAAAGAAATGACATATCTACGCCTTTCGGTCACAAAGGCATAGCTGGCCGAAAATGGCTTAAGCTTTTTCTCGCTCGTCATCCCGAtgttaaacaaagaaaatcACAATTTATGAATCCGGCTAGAGCGGcaaaattaaatcgatttattgTAAATGATTacttcgaaaaattaaaaaaagttatggtAAACTTAGAAATTGTTCAAAATCCTCAACGCATATTTAATATTAATGAAAAAGGATGTCGTTTAAATCTTCACAAAGCTCAGCAggtttttgcacgtaaaggagCTAAAAGAGTTCACCTAATTTCTCAAGAACATGCCGAGAACGTAACCATTGTTGCTTGTGGAAATGCTCTTGGCCAAACGGTTCCGCCTATGATCCTGTTTAAAGGTAAAAGGAAGAAAGAAGAATGGCTAGATAATCTACCTGTTGGATCTACTGTGGAAATGACTGATAAGGGAAGCATGACGAcacaaatatttataaaatgggTCAATCATTTTGCTAAGTATAAGCCCACCGGAACAGTACTGCTTATATTTGATGGGGCATCGTCTCATTTGGATGCGGGAATTGTTGATGTAGCTGATTCTCATGGAATTGTGCTTTTCTGCCTACCCAGTAATACAACCCATGAGACAATGTGGCCAAAAGCCACCACACCATCCAATGTAATATCATGCTTTAAGGCTACGGGAATCTATCCCTTCGATCCTAGTACGATTCCAGACATCGCCTTTGCCCCGTCCGAAATAACAGAAAACAAATTACCCTCAGATGATATTGCCACACCTTCAACGTCCACATCGATCCCTCCACTTGCTACTTCTACTCCAGTAAAACAACAAGTAGGCAAAATAATTGCTAGTGAAGATAGTAGCTCCGATAGTTCTGATGACAACTTTTCTTTGCATGACAGTTCTAGCACGGAAGATGCCAAGGATGATTTAGTATCTGTAAGTTTTAAAATCGTGTTGATAACGCCAGAATTAAAGGCTAATAACACAACGGTTGGAAGGAAGAAATCAATAAATTATCGGGCACAAGAAGTCACGAGATCATTATTtgacttaaaaaatttagaaacaccagccaacaaaaatcaaaatgggAAAGTTAAACACGATAAGTTTGCACCCGGTCCTAGTGGCATTAAAGGAAAATCAGACGGAAAAAATAaagctaaaaacaaaaaagcaaaCAAATGTGGTCCCTTTCAGGAAGGACAAAAAACAGTAAATGAAAACtggttttgttttttgtgtGCAGAAGATGCAGTAAAAGACATGAGGCTATGTACCATTTGCAAGAGATATGTGCATGAGGAGTGCGTAGGGCTCACTGCTAATGATAAAGACTTATTTCTATGTCCAGAATGTAACTAA
- Protein Sequence
- MSRKIGLWTSVQMAEALQAIKNGMLTRTAAKQFNIPRRTIRSHVLSGKTSKKFGRPSCLTPQQESELCGRIFRLADVGMPLTSKVIRRSVYEFCQRNDISTPFGHKGIAGRKWLKLFLARHPDVKQRKSQFMNPARAAKLNRFIVNDYFEKLKKVMVNLEIVQNPQRIFNINEKGCRLNLHKAQQVFARKGAKRVHLISQEHAENVTIVACGNALGQTVPPMILFKGKRKKEEWLDNLPVGSTVEMTDKGSMTTQIFIKWVNHFAKYKPTGTVLLIFDGASSHLDAGIVDVADSHGIVLFCLPSNTTHETMWPKATTPSNVISCFKATGIYPFDPSTIPDIAFAPSEITENKLPSDDIATPSTSTSIPPLATSTPVKQQVGKIIASEDSSSDSSDDNFSLHDSSSTEDAKDDLVSVSFKIVLITPELKANNTTVGRKKSINYRAQEVTRSLFDLKNLETPANKNQNGKVKHDKFAPGPSGIKGKSDGKNKAKNKKANKCGPFQEGQKTVNENWFCFLCAEDAVKDMRLCTICKRYVHEECVGLTANDKDLFLCPECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186969; iTF_01187388; iTF_01187380;
- 90% Identity
- iTF_01187388; iTF_01187380; iTF_01186969;
- 80% Identity
- -