Ppla060502.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philopedon plagiatum
Gene Symbol
-
Assembly
GCA_963971165.1
Location
OZ020193.1:54462175-54475507[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.8e-09 4.5e-07 31.9 0.0 4 37 422 455 420 460 0.92

Sequence Information

Coding Sequence
atgTATAAAAAGACCAAGGTAAAAGAGGTAGTTTCCCAGCGGCAGGTCTATAGAAGAGTAGCCCATCAAGTCCAAAATGATATGCTCCTACTTAAAAACcagttaaaaactaaaaatgacAACTGTATTAAAGGGAATGGGTCAAATAATATCCATACTGAAACATTACATGAAGATATTTTATCAGTTGATAATGACGAGGTGATTTTAGATCCTGGGGAGGAGCCATTAAATGGatccataaatttaaataactgtGTTATTTCAGATGTTTCCCAGGAAGTTAGTTTAAATGTAAAAACTGAATTGATCTTAACAGAAAGAATTAAATGCTGGGCAATAAATGAAAATGTATCACATTCTTCAGTCACAGAACTTTTACACATCCTTAAAGATTATCATCCAAGTTTACCATCAGATTGCAGAACTCTTGTAAAAACACCCAGAAATATAACACctaaagctttaaaaaatggcgggtatatacatttttatttaaaaactttattaaacGATTTTGTAACTAGCAATTTTAAGGATCTTGACTGTCCTATAAAGTTAAGTTTTAACATTGATGGTATTCCATTATTTCATAGTTCAAACTTACAGTTTTGGCCTATtctttgtattataaaaaataaagaaagtgaCCCTTTTGCTGTGGTCATTTTTTGCGGAACATCAAAGCCAGATCCTTTAGGGGTATATTTAGAAGACTTAATTAATGATTTGTCAGATTTATTATGTAACGGGTTAAAAGTAAACGACACCTTGTTCCGCATAAAAGTTCATAGCTTCATATGTGATGCGCCTGCCAAGGCATTTATAAAATGTGTTAAATCACATGGAGGATATTCCTCCTGTGATAAATGCACAGAATATGGTCAGTACGTCAATGGCAGAGTTATACTTAAAAACAGTAACAGTAAAAAGCGGTCAGATGGAACTTTCATTACCCAACTAGATGAAAGTCATCACCTTGGTATTTCCCCTTTAATACAGTTAAATGTTGGATTAGTATCAACTTTCCCCATCGATTACATGCATGCTGTGTGTTTAGGGATTACAAGAAAGCTTCTTAATACTTGGATTGGCGGAAATTCAAAAGTAAGGCTTCAAGCTAGATTAGTAGGAGATATATCAAAACAGTTACTTTCTTTGAAAACATACATCCCTGACGAAATTAATCGAAAGCCTAGGAGTTTGTCTGAGatggtTTATTCGTATAAAAGAACGACAAATAGAGGTGCTtggaatgatgtcgatatggagaGAGCCATACAAGCTGTCCGCAATGGTGAAATGGGCTGGTTAAAAGCAAGCAAGTCCTTTAATGTACCTACAGCAACTTTACGTCGTCGAGCTCTTGGGAAAAACAAATTCGCTGTTAATATTGAAAAACGCTTTGGTTCTTTTCAATCTGCATTAAATAGAGACCTTGAAGCTGCAATTGTGGATCATTTGCTGAACTTAGAATCTCGTTTTTTCGGGTTGACGACAACAGATGTGCGACAGCTGGCGTATGAAGTTGCTGAAAAAATGAAGATCAAACACCCTTTTAATAACGAAACTAGGATGGCTGGAAAGGGGTGGCTTCACGGTTTTCGTCAACGTCATCCTCAATTATCATTGCGTTGTCCAGAAGCCACGTCGCTTGCCAGAGCTGAGGCGTTTAATAAACCACAGATAAGTAAATTTTTCACCAAGCTGGAACAAATCATCGACGAGCACAAAATGGAAAACACAATGATTTTTAATATGGATGAATCAGCGCTGACCACAGTACAAGTTCCTCCAAAAGTGTTTgctaaaaaaggcaaaaaacaaGTGGGCGCTATCACAAGTGCAGAGAGAGGGGTGCACACGACAGTTGTCGTCTGCATGAGTTCTGGGGGAATGTATGTACCGCCATCCATAATTTTCCCGCGCAAACGGTTCAATCCGGACTTATACGATGGAGCACCCATTGGAACTTTAAAACTTTATAACGAGTCAGGTTACATGACGGCAGATTTGTTCGTAAAGTGGATTAAACACTTTATAGATCACGTGAGGCCCATTGCAGAAAAAAAAGCTTTGTTAATTTTAGACGGCCATTCTAGTCATAAGAGCTACCAGGCGTTAGAACTGGCTAAACAAAATTCAGTCGTTCTTCTGTGCCTTCCTGCACACTGCACCCACCACCTACAACCCTTAGACGTAGGATTTTTTGGTCCCCTTCACAAATATTACAACCAAACCGTTACCCATTGGTTAAAAGGAAATCCCGGCCGTGCAGTCACAATTTATCAGGTATCCAAACTTTTTAACCATGCCTATGAAAGAACAGCTACACTTGAAATTGCAACTAGTGCGTTCCGTGCCACAGGAATATCGCCGTTTAACGCTAACATTTTTCCTGAACATCTATTTTTACCGAGTTTAACCACGGACGTGCCAGAAGCAGTACCTGTTAAAGAAGGAGAACCCCttaatgaaaatttagaaaatctgCAAGAGCCTCAAACGAATAATACAGAAATACAAGCACCCACTGTGAAACCTACAGAGCAAGAACAACTAATTTTTACAGAAGAAGTATCTCAGGATCAAGCACCAACCTGCTCTTCAAAAGAGGTCGATATACAAAATATCTTGCAAAAATTGTCACCAGTGCCTCAGAGCAACATAAGAAAAACTGTCAAGCGTAAAACTGGTGGATATCAAGACGTTTTAACCGAAAGTCCGTATCTTCAAGGCATTCGCGAAAAGGAAATCAAGAAGAACCAAGAACAAGAAAGAAAGAACAAAAGAAACgagcagttaagaaaaagtaaaaGACCTGCTGTAAGGATTGTAATGGCAGACGAGACTagtgaagaagaagaagatccCTACCGTGTTAGTGACAACGAAGATGACTGTCCGTGTCTTTATTGTCACGATTTGTTCAGCAGATCAAAATCCAAAGAAACTTGGCTACAATGTCAACTTTGCCAAAAGTGGGCACATGCAGATTGTGCGGGTGTCCCCACAAAAGCAAAAAAGTTCATTTGTGATCTTTGCAAGGActaa
Protein Sequence
MYKKTKVKEVVSQRQVYRRVAHQVQNDMLLLKNQLKTKNDNCIKGNGSNNIHTETLHEDILSVDNDEVILDPGEEPLNGSINLNNCVISDVSQEVSLNVKTELILTERIKCWAINENVSHSSVTELLHILKDYHPSLPSDCRTLVKTPRNITPKALKNGGYIHFYLKTLLNDFVTSNFKDLDCPIKLSFNIDGIPLFHSSNLQFWPILCIIKNKESDPFAVVIFCGTSKPDPLGVYLEDLINDLSDLLCNGLKVNDTLFRIKVHSFICDAPAKAFIKCVKSHGGYSSCDKCTEYGQYVNGRVILKNSNSKKRSDGTFITQLDESHHLGISPLIQLNVGLVSTFPIDYMHAVCLGITRKLLNTWIGGNSKVRLQARLVGDISKQLLSLKTYIPDEINRKPRSLSEMVYSYKRTTNRGAWNDVDMERAIQAVRNGEMGWLKASKSFNVPTATLRRRALGKNKFAVNIEKRFGSFQSALNRDLEAAIVDHLLNLESRFFGLTTTDVRQLAYEVAEKMKIKHPFNNETRMAGKGWLHGFRQRHPQLSLRCPEATSLARAEAFNKPQISKFFTKLEQIIDEHKMENTMIFNMDESALTTVQVPPKVFAKKGKKQVGAITSAERGVHTTVVVCMSSGGMYVPPSIIFPRKRFNPDLYDGAPIGTLKLYNESGYMTADLFVKWIKHFIDHVRPIAEKKALLILDGHSSHKSYQALELAKQNSVVLLCLPAHCTHHLQPLDVGFFGPLHKYYNQTVTHWLKGNPGRAVTIYQVSKLFNHAYERTATLEIATSAFRATGISPFNANIFPEHLFLPSLTTDVPEAVPVKEGEPLNENLENLQEPQTNNTEIQAPTVKPTEQEQLIFTEEVSQDQAPTCSSKEVDIQNILQKLSPVPQSNIRKTVKRKTGGYQDVLTESPYLQGIREKEIKKNQEQERKNKRNEQLRKSKRPAVRIVMADETSEEEEDPYRVSDNEDDCPCLYCHDLFSRSKSKETWLQCQLCQKWAHADCAGVPTKAKKFICDLCKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-