Ppla033060.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020191.1:38124411-38124968[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-08 3e-06 29.2 0.1 1 41 18 58 18 60 0.95 2 2 4.4 5.2e+02 2.9 0.0 22 36 81 96 81 101 0.86
Sequence Information
- Coding Sequence
- ATGCCACATCGAAACCGACAAAAATTGGGAGCACGTCACTACCAAAACTATTCGGAGGAGACATTGCAGCAGGCCTTGCAAGCCATGGCAGCTGGAAGCAGTTCAAGGCAGGCAGAACGGAGATTTAATATTCCACGCAGAACATTATTGAATAAGCGAAAACAGAAACACACTGGTAACGTCGGCCATCCATTAGCTCTGACGGAAATCGAAGAGCGTCACTTTGTAGATGTGCTAATTGCAAGTGCTGAATATGGTTCACCCTTAAGTACCCTAGAAATAAGAATGCTGGTAAAGCAATATTTGGATAAGCAAGGTGTTCAAACTGCGGAGTTTGGCAAAGATAATTTACCAGGCGTTGAATGGATTAATTCTTTTCTAGATCGACACAAACATATACTGAGACAAAGAAATTGTCAAAACGTGAAAAGAGACAGGGCGTCTAATACAGAAGAACAAATGCGGGCATATTTTGAGAATTTggaaaacttattccgaagaagctacagtgtagcgaaacatgtcaataattttgtcaatatagtggaagtttactaa
- Protein Sequence
- MPHRNRQKLGARHYQNYSEETLQQALQAMAAGSSSRQAERRFNIPRRTLLNKRKQKHTGNVGHPLALTEIEERHFVDVLIASAEYGSPLSTLEIRMLVKQYLDKQGVQTAEFGKDNLPGVEWINSFLDRHKHILRQRNCQNVKRDRASNTEEQMRAYFENLENLFRRSYSVAKHVNNFVNIVEVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187400;
- 90% Identity
- iTF_01187400;
- 80% Identity
- -