Ppla058717.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020193.1:44251779-44253680[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-10 5.2e-08 34.9 0.0 4 37 18 51 16 56 0.92
Sequence Information
- Coding Sequence
- atggtTTATTCGTATAAAAGAACGACAAATAGAGGTGCTtggaatgatgtcgatatggagaGAGCCATACAAGCTGTCCGCAATGGTGAAATGGGCTTGTTAAAAGCAAGCAAGTCCTTTAATGTACCTACAGCAACTTTACGTCGTCGAGCTCTTGGGAAAAACAAATTCGCTGTTAATATTGAAAAACGCTTTGGTTCTTTTCAATCTGCATTAAATAGAGACCTTGAAGCTGCAATTGTGGATCATTTGCTGAACTTAGAATCTCGTTTTTTCGGGTTGACGACAACAGATGTGCGACAGCTGGCGTATGAAGTTGCTGAAAAAATGAAGATCAAACACCCTTTTAATAACGAAACTAGGATGGCTGGAAAGGGGTGGCTTCACGGTTTTCGTCAACGTCATCCTCAATTATCATTGCGTTGTCCAGAAGCCACGTCGCTTGCCAGAGCTGAGGCGTTTAATAAACCACAGATAAGTAAATTTTTCACCAAGCTGGAACAAATCATCGACGAGCACAAAATTGAAAACACAATGATTTTTAATATGGATGAATCAGCGCTGACCACAGTACAAGTTCCTCCAAAAGTGTTTgctaaaaaaggcaaaaaacaaGTGGGCGCTATCACAAGTGCAGAGAGAGGGGTGCACACGACAGTTGTCGTCTGCATGAGTTCTGGGGGAATGTATGTACCGCCATCCATAATTTTCCCGCGCAAACGGTTCAATCCGGACTTATACGATGGAGCACCCATTGGAACTTTAAAACTTTATAACGAGTCAGGTTACATGACGGCAGATTTGTTCGTAAAGTGGATTAAACACTTTATAGATCACGTGAGGCCCATTGCAGAAAAAAAAGCTTTGTTAATTTTAGACGGCCATTCTAGTCATAAGAGCTACCAGGCGTTAGAACTGGCTAAACAAAATTCAGTCGTTCTTCTGTGCCTTCCTGCACACTGCACCCACCACCTACAACCCTTAGACGTAGGATTTTTTGGTCCCCTTCACAAATATTACAACCAAACCGTTACCCATTGGTTAAAAGGAAATCCCGGCCGTGCAGTCACAATTTATCAGGTATCCAAACTTTTTAACCATGCCTATGAAAGAACAGCTACACTTGAAATTGCAACTAGTGCGTTCCGTGCCACAGGAATATCGCCGTTTAACGCTAACATTTTTCCTGAACATCTATTTTTACCGAGTTTAACCACGGACGTGCCAGAAGCAGTACCTGTCAAAGAAGGAGAACCCCttaatgaaaatttagaaaatctgCAAGAGCCTCAAACGAATAATACAGAAATACAAGCACCCACTGTGAAACCTACAGAGCAAGAACAACTAATTTTTACAGAAGAAGTATCTCAGGATCAAGCACCAACCTGCTCTTCAAAAGAGGTCGATATACAAAATATCTGGCAAAAATTGTCACCAGTGCCTCAGAGCAACATAAGAAAAACTGTCAAGCGTAAAACTGGTGGATATCAAGACGTTTTAACCGAAAGTCCGTATCTTCAAGGCATTCGCGAAAAGGAAATCAAGAAGAACCAAGAACAAGAAAGAAAGAACAAAAGAAACGTTGTTAAAAGGAAGCTTGTAGACAATGActcaaatgaaaataaaaatgaaaaaaaacaggagcagttaagaaaaagtaaaaGACCTGCTGTAAGGATTGTAATGGCAGACGAGACTagtgaagaagaagaagatccCTACCGTGTTAGTGACAACGAAGATGACTGTCCGTGTCTTTATTGTAACGATTTGTTCAGCAGATCAAAATCCAAAGAAACTTGGCTACAATGTCAACTTTGCCAAAAGTGGGCACATGCAGATTGTGCGGGTGTCCCCACAAAAGCAAAAAAGTTCATTTGTGATCTTTGCAAGGActaa
- Protein Sequence
- MVYSYKRTTNRGAWNDVDMERAIQAVRNGEMGLLKASKSFNVPTATLRRRALGKNKFAVNIEKRFGSFQSALNRDLEAAIVDHLLNLESRFFGLTTTDVRQLAYEVAEKMKIKHPFNNETRMAGKGWLHGFRQRHPQLSLRCPEATSLARAEAFNKPQISKFFTKLEQIIDEHKIENTMIFNMDESALTTVQVPPKVFAKKGKKQVGAITSAERGVHTTVVVCMSSGGMYVPPSIIFPRKRFNPDLYDGAPIGTLKLYNESGYMTADLFVKWIKHFIDHVRPIAEKKALLILDGHSSHKSYQALELAKQNSVVLLCLPAHCTHHLQPLDVGFFGPLHKYYNQTVTHWLKGNPGRAVTIYQVSKLFNHAYERTATLEIATSAFRATGISPFNANIFPEHLFLPSLTTDVPEAVPVKEGEPLNENLENLQEPQTNNTEIQAPTVKPTEQEQLIFTEEVSQDQAPTCSSKEVDIQNIWQKLSPVPQSNIRKTVKRKTGGYQDVLTESPYLQGIREKEIKKNQEQERKNKRNVVKRKLVDNDSNENKNEKKQEQLRKSKRPAVRIVMADETSEEEEDPYRVSDNEDDCPCLYCNDLFSRSKSKETWLQCQLCQKWAHADCAGVPTKAKKFICDLCKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187263;
- 90% Identity
- iTF_01187201; iTF_01187310; iTF_01187311; iTF_01187260; iTF_01187263; iTF_01187251; iTF_01187256; iTF_01187261; iTF_01187262; iTF_01187264;
- 80% Identity
- -