Ppla054651.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020193.1:26184936-26190383[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-09 5.2e-07 31.7 0.0 5 37 1 34 1 38 0.90 2 2 4.2 4.9e+02 3.0 0.0 28 41 492 505 492 509 0.78
Sequence Information
- Coding Sequence
- ATGAGGAACGCCATAAAATGTGTGCTACGAGGTACGATATCCGTGAGAAGAGCTGCAAGTCAGTTTAATATTCCCAAATCCACACTGCAAGACAATGTTTCACAGGCACGCCAGAAGGGAATAAACAACATTGACGACTCCGGAAACAAGAGCGAATCAAATCATGATGACGAAAGAAGCAAATATGCCACAAGAAAGGTTTTTTCTACAAAAGAAGAAACCGAATTGGAAGAATATATGAAGAACTCTTCGACGATGTTTTATGGATTAACTTATAAGACAGCTAGAATATTGGCCTACGAATTTGCATCTAGTGTAGATAAAAAGTATCCAAAAACTTGGGATGAGAGTAAAATGGCCGGAGTGGAGTGGATGCGTTCGTTTATGAGTCGGCATCCTCGTCTTTCTTATCGCAAGCCAGAGAATACAAGCTTTGCACGAGCTTCCTGCTTCAACAAATCAAACGTGGatctcttttttaaaaattatttggagaTACAAACTAAATATCATTTTCCGCCGCATAAAATATGGAACACAGATGAAACTGGTGTAACAACCGTTCTACAAGCTCCAAAAGTAATAGCTGAGACTGATGGCGCCAAAAGCGTAGGTCAATGTGTTTCAGGAGAAAGAGGTTCTCTGGTTACAATGTGCGGAACAATTTCGGCGTCCGGAAATACAATTCCTCCATTATATGTATTCCCAAGAGTGAGAATGAAAGATCAGCTTATGACTGGTGCTGTTCCTGGTGCGATTGGATATGCTGAAAAGTCCGGTTGGATGActtcaaaattgtttataaaactaTTAGAGCATATTCAAAAACATACTGGTGCTAGTCCTACTAGCCAGATTCTCTTGTTGTTAGATAATCATGAGACCCATACAAGCCTTGAAGCAATTAATTACTGTCGGGAAAATGCAAATCCCGGAAAGCCAATTACTATTTTTGATATTGCTAGATTAACATCTGATCCATTTCTACAAAGTTTAACcccaaagaatattttaaagagTTTCGAAAGCACCGGAATATGGCCCACTAATTCTATGATATTCAGTGATGACGATTTTATGGGAGCATATGCAACTGATCGCCCAAATCCTGAAAATAATGCCGATACTCCTGACAGGTCTTTGGTCATTAATGACACATCTATTACGACACCAGCAGTATTAAATACTCCCACCGTTGACAACGAAAACGAAAGTGCGGAAAAGATGCAAACAAAAAATCGCGGTTGGGCAAGTCGAGAATCTATACTAGTACGCCCGAGAGGTGGCTTTGTGGAATATGAGGATATTGATGATGGAAATCTTATATTAGTAAATGAAAAGGAACCCAAAATTAACGTATTAAAAATTGACGTCAATCCTCCGAAAAACCCCATCCAAGCTAACATTGTTCCTGCAGATGAATGCGATGAAGCagaattagaaataaataatcAGAACGAGTCTAAATCTAGAGTTCCTTATTCTACTTTAAAAGATCGGCTTAAAAGTAATAACTCTTCTGCGGCGCGACTTGGACGTCATGCCACATTTTCTCCTGAACAGGAAGTACAACTTGCAGATCGATGCATTTATTTAGCAAACATGTTTTATGGTCTTACAGCCATGGATTTACGAAAAATTGTTTACGAATTTGctcaaaaaaacaacatttcaCACTGTTTTAACCATAATAAGAAGATGGCGGGTAAAGACTGGCTGCAGTCGTTCTTAAAACGCCATCCTCGTCTCAGCTTACGGAAACCTGAGTCAACAAGTTTAGGAAGAATTGCAGGTTTTAATGCTGAAAGCGTCGGTCTTTTCTATAGAAATTTGGATGAAGTTTTATCTAAACATAACTTTCAAGCAAACCGTATTTTTAACGTGGACGAGACAGGCGTTACAACAGTGCAAACTCCATCAAAAATTATTGCTCCAAAAGGAGTTAAACAACTTGGTAAGGCTGTGAGTTGGGAGAGAGGTAGAAATATAACAATTTGCTGTTCAATAAGTGCGTCTGGGATATATATACCTCCGATGTTTATATATCCTAGAAGCAGAATGTCGGAACAACTCAAACGTAACGGACCTGTGGACGCTATATATGAATGCTCAGCGAAAGGTTGGATGAATGAAGAGCTTTTTCTGACTTGGCTcaagcattttaaaaaacatgcaGCAACTTCAAATGAAAATAAAGCCTTGTTATTATTAGCCAATCACAGTAGTCACTGCTCATTACTGGTATATGAGTTTTGTCGTGAGAATGGAATAATAATGTTATCTTTTCCGCCTCACACCTCCCACAAACTCCAACCACTTGATTTAACAGTTTTTGGACCCTTAAAGTCTGCTTACTCAAACGAGTGTTCGCTATTTATGAGACAAAATATCCATCAAAAAATAACCCCATATGATGTTGCTGAGATTTTTAATCGAGCGTTCCTCCAGGTTGCTACAATGGGAAAAGCCCAAAAAGGGTTCGTAATACCCGCACTTCCCCTATATTAG
- Protein Sequence
- MRNAIKCVLRGTISVRRAASQFNIPKSTLQDNVSQARQKGINNIDDSGNKSESNHDDERSKYATRKVFSTKEETELEEYMKNSSTMFYGLTYKTARILAYEFASSVDKKYPKTWDESKMAGVEWMRSFMSRHPRLSYRKPENTSFARASCFNKSNVDLFFKNYLEIQTKYHFPPHKIWNTDETGVTTVLQAPKVIAETDGAKSVGQCVSGERGSLVTMCGTISASGNTIPPLYVFPRVRMKDQLMTGAVPGAIGYAEKSGWMTSKLFIKLLEHIQKHTGASPTSQILLLLDNHETHTSLEAINYCRENANPGKPITIFDIARLTSDPFLQSLTPKNILKSFESTGIWPTNSMIFSDDDFMGAYATDRPNPENNADTPDRSLVINDTSITTPAVLNTPTVDNENESAEKMQTKNRGWASRESILVRPRGGFVEYEDIDDGNLILVNEKEPKINVLKIDVNPPKNPIQANIVPADECDEAELEINNQNESKSRVPYSTLKDRLKSNNSSAARLGRHATFSPEQEVQLADRCIYLANMFYGLTAMDLRKIVYEFAQKNNISHCFNHNKKMAGKDWLQSFLKRHPRLSLRKPESTSLGRIAGFNAESVGLFYRNLDEVLSKHNFQANRIFNVDETGVTTVQTPSKIIAPKGVKQLGKAVSWERGRNITICCSISASGIYIPPMFIYPRSRMSEQLKRNGPVDAIYECSAKGWMNEELFLTWLKHFKKHAATSNENKALLLLANHSSHCSLLVYEFCRENGIIMLSFPPHTSHKLQPLDLTVFGPLKSAYSNECSLFMRQNIHQKITPYDVAEIFNRAFLQVATMGKAQKGFVIPALPLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -