Ppla014636.2
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020189.1:102287417-102291275[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0034 0.4 12.8 0.0 10 39 23 51 21 55 0.89 2 2 4.6e-06 0.00054 22.0 0.2 2 39 425 463 424 468 0.87
Sequence Information
- Coding Sequence
- ATGGGCCGGAAGTACAAAAAGAAACTTGGCAGTAGGAACTATAAAAAGTATACCGAAGATTTGGCGAATGCTGTAAGAGCTGGACAAAGTTATCGGGATGCGGCTGAACGGTATGGAATTCCCTGGAAAACCGTATGGAACAGAGCTGAGGGACTACACTTAAAGAAGGTTGGGGGACAAACAACTTTATCCGAAGTAGAGGAACGACACTTAGTCGATGTACTTCTTGCTGCGTCTGAATTTGGCAGCCCATTGACTTCCCTTGACTTAAGAATATTGGTGAAGCGTTACCTGGAGCGAATGGGGAAGACTGTGCGAAAATTTAAGAATAATCTACCAGGTGGTGATTGGGTTCTACATTTTTTAGATCGACACAAACACAAATTATCGAAACGAAGTTGTCAAAATATTAAGCACGCTCGAgctgaaaaaaacgaaaaagaaatgaatgaatattttcaaaatttaaggcAAAGTATAGAAAACGTTCCacctaataatattttaaattttgatgaaaCAAATTTGTCCGACGATCCTGGTTCTACCAAGTGTATTTTTCGCCGAGGAATGAAATATCCAGAACGAGTATTAAATACTTCCAAAGCATCGATTTCGATCATGTTTGCCATAACAGGATCCGGGGAAGTTTTGCCACCCTATACAGTCTACAAGGCAGAGAGACTCTATGACCAATGGACCATTGGAGGACCGAAAAATGCTCGTTATAATAGATCAAAATCGGGATGGTTTGACGCTGTTTCATTTGAAAACTGGTTTACCACCATTGTTGTTCCCTGGGCGAAAAAAAATCCTTTGCCGAAAGTCATAATAGGCGACAATTTATCGTCGCACCTAAATGTTAACATAATAGTAGAGTGCCAAAGAAACAATATTAGGTTGCCTTCAATGAGGGCAGAACAACATGTGCCAGAAAATGTAAGTAGTTCATTGTtggaatatttaaaagaaacacgCTCTCCTCTAGCTGAAAGGCAACCCCGACAAAGCAAAAAGACTCTTAAAATTGCTCCTGGAAAATCAGTGTCATTTGAAGATATATGTCCAGAGCCATTAGACTTAGAAATAGAAGAGTCCGAACAAGAAAACGTCGACGAAAACTCAAACGATGAATTAAATGAACAGTTATCAGAAACAGTAAATGAACACGAAGACGGGGTTAATAAAGATGAAGAAGAAATCTCATTTCCACAAGAAGGAAAAAATATGGCTCGCGGGCGGCAACGAAAAACCGCTAAAGGTCAATTTGATGAGCAATCCATGAGAGCTGCTGTTATAGCAGTCACCGAAGAGAAGATATCTTTAAGACAAGCGGCTGCAAGATACAACTTGAAATTTCAAACGGTTTACGAATATgtaaaaaggcaaaaaataatcCTACAGAAGAGATTAGAATATGACGACTTTGCAATTAGTAGCGTAACGGATAGGAATGTGGATCAAAACAATGTAGGACCCCCACCAGTTATAGATCCAAATGAACCATCAACGTCAAGCTACATTGAAGAAAATAACATGTCGGAAAAGAATTCTTTACCTTTAACACCACCAAGTAATACAACTCCTAAACAAAATCAAAGCAGAGAAACATTTATAGGCGAGGTCCGTGTAGCCCCGCCCAGTGGGTAA
- Protein Sequence
- MGRKYKKKLGSRNYKKYTEDLANAVRAGQSYRDAAERYGIPWKTVWNRAEGLHLKKVGGQTTLSEVEERHLVDVLLAASEFGSPLTSLDLRILVKRYLERMGKTVRKFKNNLPGGDWVLHFLDRHKHKLSKRSCQNIKHARAEKNEKEMNEYFQNLRQSIENVPPNNILNFDETNLSDDPGSTKCIFRRGMKYPERVLNTSKASISIMFAITGSGEVLPPYTVYKAERLYDQWTIGGPKNARYNRSKSGWFDAVSFENWFTTIVVPWAKKNPLPKVIIGDNLSSHLNVNIIVECQRNNIRLPSMRAEQHVPENVSSSLLEYLKETRSPLAERQPRQSKKTLKIAPGKSVSFEDICPEPLDLEIEESEQENVDENSNDELNEQLSETVNEHEDGVNKDEEEISFPQEGKNMARGRQRKTAKGQFDEQSMRAAVIAVTEEKISLRQAAARYNLKFQTVYEYVKRQKIILQKRLEYDDFAISSVTDRNVDQNNVGPPPVIDPNEPSTSSYIEENNMSEKNSLPLTPPSNTTPKQNQSRETFIGEVRVAPPSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -