Ppla091326.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020198.1:6982971-6983438[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-11 5.7e-09 37.9 0.0 1 42 18 60 18 62 0.94
Sequence Information
- Coding Sequence
- ATGGTGCGAAATTACACGCGGTTGGCTGGATCAACGCCCCATAAAAACTATACGGAACAAGATTTAGCTGATGCAGTGCAAGCTATTAGAGTGGGGAGGATGTCACAGGTACAAGCCTCCAAACGCTGGAAAATACCTAGGGGAACTCTTCAAAATAGGCTATTTGAGAGGCATGAGGGACATGTAGGTCACCCCACCGTTCTTACCCAACAGGAGGAGACCCTAATATCGGAGACCATCAACCAGGTAGCAAATTGGGGTTTTCCCGATACTGTTAGTCACACCAGAGATATTGTACAAgaatatttaacaaaacaaGGCAGAAACGTTCCTGAATGGCCCAACAAGAGGCCAGGACCGGACTTCATTGAAAAATTTATTACCAGAAATAACATTAGCATTCGATTGGCATCTAATATTAAGCGTGCACGAGTGCACGTGCTTCTGTTGGGCGCGCggaaacattaa
- Protein Sequence
- MVRNYTRLAGSTPHKNYTEQDLADAVQAIRVGRMSQVQASKRWKIPRGTLQNRLFERHEGHVGHPTVLTQQEETLISETINQVANWGFPDTVSHTRDIVQEYLTKQGRNVPEWPNKRPGPDFIEKFITRNNISIRLASNIKRARVHVLLLGARKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187017;
- 90% Identity
- iTF_01187084; iTF_01187071; iTF_01187115; iTF_01187073; iTF_01187017; iTF_01187216; iTF_01187062; iTF_01187063; iTF_01187159; iTF_01187064; iTF_01187066; iTF_01187068; iTF_01187228; iTF_01187069; iTF_01187070; iTF_01187599;
- 80% Identity
- iTF_01187071;