Ppla088114.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020197.1:32618467-32619601[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-11 5.4e-09 38.0 0.2 1 40 25 65 25 69 0.94
Sequence Information
- Coding Sequence
- atggtACGCACATACAAAAAAACATTATGCCATGTACGAAATGGTAAGAACTATGTACCCTATAAGAGTTATACAGAAGACGCATTGCAAAATGCAATAAAGGCTGTGCAAACTAAAAGCCTATCACTAGATGATGCTGCAAAGAAATATAGGATACCTAGGTCTACTTTGGCTTTAAGGGCAAAGAAAAAGAGCACATATGCAACTTCAGGTAGACCCTGTCTGCTCACAGCGAATGAGGAAGATGTATTTGTTCAGCACTTGAGCACGGTATCTTCCTGGGGCTTTCCTTTCGACCTACTGGACTTGCGGTTATTAGTAAAATCTTACCTAGATAAAAAAGGAGTTAATGAGcaaagattaaaaaataatcttcCAGGTGCAGATTGGGCTGCAAGTTTCATTAAAAGGCACAAGGAGGAAATATCAAATAGATTATCGGCAAATATTTCAACGAAAAGGGCAGTGATGAATAGACAAAAACTGGATGTCTTTTTTGATAATGCTAAGGATATTTTTAGTAGGACAGACCCATCACTTATAATCAACTTCGACGAAACTAATTTGACAGACAACCCCGGAGCCAAGAAATTTATATTCAAAAGGGGCACGAAGTATCCTGAAAGAGTGGTAAATTCTACAAAAACGGCGATAAGTTTGATGTACGCTGGAACAGCTAATGGTCAGCTCTTACCAGTATACGTGGTATATAAAGCAGAACACATGTGGAACACCTGGACTCAAGGTGGACCTCCAGACGCAAGATACAATCGTTCTAAGAGTGGATGGTTCGACTCAGtttgttttgaaaattggtTTTACTCTATTATTGTTGTACCATTTGTTAGAGGCAAAGATGGCCCAAAGATTTTGGTTGGAGACAACTTGTCTTCTCATTTTTCCGCTGACGTTTTAAAAACATGCCAAGAAATGGACATTTCATTTGTGTGCCTTCCAACTAATTCCACGCATATAATGCAGCCTCTTGATGTGGCATTTTGTGCTCCCCTGAAAAAATATTAG
- Protein Sequence
- MVRTYKKTLCHVRNGKNYVPYKSYTEDALQNAIKAVQTKSLSLDDAAKKYRIPRSTLALRAKKKSTYATSGRPCLLTANEEDVFVQHLSTVSSWGFPFDLLDLRLLVKSYLDKKGVNEQRLKNNLPGADWAASFIKRHKEEISNRLSANISTKRAVMNRQKLDVFFDNAKDIFSRTDPSLIINFDETNLTDNPGAKKFIFKRGTKYPERVVNSTKTAISLMYAGTANGQLLPVYVVYKAEHMWNTWTQGGPPDARYNRSKSGWFDSVCFENWFYSIIVVPFVRGKDGPKILVGDNLSSHFSADVLKTCQEMDISFVCLPTNSTHIMQPLDVAFCAPLKKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187058; iTF_01187061;
- 90% Identity
- iTF_01187058; iTF_01187061;
- 80% Identity
- -