Ppla044523.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020192.1:41287140-41287682[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-11 3.8e-09 38.5 0.0 1 43 17 59 17 61 0.91
Sequence Information
- Coding Sequence
- ATGGTCAGGCATTATAAGAAAAAGTTGGGGATTAATTTCATGAACTACGATGAAGAAACGCTCAAAAGGGCCCTAAGTGACATCAAAAAGGGCAAAAAATCCTTAAGGCAGGCTGccgaatattataaaatacctaaatctACTCTGCAtgatagaattaaaaataaaacttttaaaaaacatggTGGACAACCTAGACTTTCCTCAGAAGAAGAAAAAATGATAGCAAAGGGCATCACCACGTTCAGTGAATGGGGTTTCCCCATGACTCGCAGGGATATAAGATTGCTTGTAAACAATTACCTTGACCGGAAAGGTAAAATAATTAGAACTTTTAAAGATAACTTACCTGGATCTGAatggttttataaattttttcaaagacaaaatatcttaacagAAAGGTTTGCTCAGAATATAAAGAGATGCAGGGCTAATGTAACTAAAGACATGATACAAGATTATTTTCAAAACTTAGAAGAGACCTTGGAAGGTGTGGAGCCTACACACGTAGTCAATTATGATACCTATACCTATTCATGA
- Protein Sequence
- MVRHYKKKLGINFMNYDEETLKRALSDIKKGKKSLRQAAEYYKIPKSTLHDRIKNKTFKKHGGQPRLSSEEEKMIAKGITTFSEWGFPMTRRDIRLLVNNYLDRKGKIIRTFKDNLPGSEWFYKFFQRQNILTERFAQNIKRCRANVTKDMIQDYFQNLEETLEGVEPTHVVNYDTYTYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187043; iTF_01187021; iTF_01187065; iTF_01187040;
- 90% Identity
- iTF_01187043;
- 80% Identity
- -