Ppla013994.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- FAM200B
- Assembly
- GCA_963971165.1
- Location
- OZ020189.1:99232841-99236537[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-11 3.3e-09 38.7 0.0 1 37 319 355 319 359 0.93
Sequence Information
- Coding Sequence
- atgagtgaAGAAGAAGACTTTTATAACACAGATGACGAAAAAGAAAAGACAACCGCTCCGGTTCGCAAGAGAAAGAAATTTGACCAAAAATTTAGAACCGAATGGGAAAAACAATTTCCATGGTTAAGTCGTATAGATGgaaaccCGTACATGTCAAAATGTAAATGTTGCGAAACAAGCTTTTTCGCTGAACACAATATAGCTTTCTTGGCATCGGATCATTTGACTGGTATTTTAAAACGCTGCTTTCCGGATTCAAAAATCGCCGAGGATTTCATGTTAGGAAGAACAAAACTAACTAACATCGTTAAAAACGTAATAGCACCTTGTGAAAGCGAGGAGTTAGCGAAAAAATTATCAAAGCGTAGGTTTAGCGTACTTATAGATGAAACTACAGATGTTGGTACAGTGACAAGTCTTTGTATTGTAGTACGTTTTTTTCATGAAGAAAAGAAGCAAATCATATcccagttttttaaattattgaataTTTTTGATGATAAAACTGCTACTACCGGAGCCACGGCTGAAAAATTGTATGACATCCTTATCAACGCCTTTTTGAATCATAAAGTGCCACTAGAAAACATTATTGGATTTGGCTCTGATGACTGTAATACAATGATGGGAGCACACAATTCAGTTGCTTCTCGACTTAGGGCTAACTTTGAAGGCATAGTAATAAATAAGTGTATTTGTCATTCTTTACATTTGGTTGTCAGTCAGGCTTGTAAAGTACTACCTAGAATTTGTGAAGACATGGCTAGGGatatagacaatttttttaaaaacagtgcTAAACGCCAGACAGAACTTAAAGAGTTTCAGCACTTTTGTCAGGTCGAGCACCATAAAATATTAAGAGCATCCCAAACAAGGTGGCTGTCACTTTTAAGTGTAGTACAAAGAATAGTAGAACAATGgtataaTATGGGCAAGGTACGAGGCAAGTGGAAAGaagaaaatatggttttagCCATAAAGAAAGTAAGGAGTAAAGAAATGTCAATAAGAGAAGCGAGCGAGCGTTATTCTGTTCCAAAAAGTACATTAAAGTACCTACTTAAAGATCTTCAAGACACCAAAGAAGTAATCTTAAAATCATGTACCGGCAATAGTGGTACTTATCACACAACATTTACCGATGAGCAAGAATCAGTTTTAGCCAATCACATTAAAAACTTAGACAGTCAGCTTATGCAACTTAATAAAACCGAATTCTTGAAGCTTGTTTATCAATTTGccgaaaaactgaaaattgatCACCCATTcaacataacaaaaaaaattgcaggAAAGAATTTCTATTACGATTTCATGAAACGGCATCCAGAATTGAGTTTAAGGAAGGCGGAGACAACCAGTCTGCAGAGGGCAACAGGTTTTAGTAAGGATCAGGTAGATCGCATTTTTGATAAACTTACTGAACTCATGGAAAAACACTCTTTTAGTTCGTCCAAAGTTTTTAATGCCGATGAAACCGGAGTTTCTTGTGTGCACGCCAATCAGTTGAATGTTTTATCAGTAAAAGGGAAAAAGCAGGTTGGAAAACTAACTTTTGGCGAAAGGGGCAAAAATGTTACTGTCCTTTTAGCAATAAATACTTCTGGGGATCAAGTTATCCCTCCACTTTTTGTCTTCCCACGGGCGAGAATAGACAACGATCTTAAAAAGGATGCACCCTTGAGAAGTATTTTTGACGCACAACCCAGTGGCCGGAAAACAAAGGAAAGTTTTCTGAAATGGTTTCAAAGTTTTTTGGACGAGTAA
- Protein Sequence
- MSEEEDFYNTDDEKEKTTAPVRKRKKFDQKFRTEWEKQFPWLSRIDGNPYMSKCKCCETSFFAEHNIAFLASDHLTGILKRCFPDSKIAEDFMLGRTKLTNIVKNVIAPCESEELAKKLSKRRFSVLIDETTDVGTVTSLCIVVRFFHEEKKQIISQFFKLLNIFDDKTATTGATAEKLYDILINAFLNHKVPLENIIGFGSDDCNTMMGAHNSVASRLRANFEGIVINKCICHSLHLVVSQACKVLPRICEDMARDIDNFFKNSAKRQTELKEFQHFCQVEHHKILRASQTRWLSLLSVVQRIVEQWYNMGKVRGKWKEENMVLAIKKVRSKEMSIREASERYSVPKSTLKYLLKDLQDTKEVILKSCTGNSGTYHTTFTDEQESVLANHIKNLDSQLMQLNKTEFLKLVYQFAEKLKIDHPFNITKKIAGKNFYYDFMKRHPELSLRKAETTSLQRATGFSKDQVDRIFDKLTELMEKHSFSSSKVFNADETGVSCVHANQLNVLSVKGKKQVGKLTFGERGKNVTVLLAINTSGDQVIPPLFVFPRARIDNDLKKDAPLRSIFDAQPSGRKTKESFLKWFQSFLDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -