Ppla031988.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020191.1:19640086-19641165[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-12 3.8e-10 41.7 0.0 2 42 19 60 18 61 0.95
Sequence Information
- Coding Sequence
- ATGCCTACACAATATAATAGAAAATCTGGTTCCAAGCCAAGGCGTCAATGGAAGCAAGAAGATCTAGAAGAAGCTTTAAGATGTGTAAATTCTGGCGAAATGGGGGTCAATGAGGCTTCACGTGCATACAGTATTCCTTCGAGAACACTCCGTAGAAGAAGGGTTCAGGGAACTATGACTAATGTTCCTCTTGGTCCCCAAGGTGTTTTAGGAATAGAAAATGAAAAACGACTGGTAAAACATATTCAGAAACTGGAAAAGGCGGGATTCGCTCCAGATAGAGAGACCATTCGGATATTACGCTTTCAGTTTGCAGAAAAATTAGGAATCAATTACCGGTTTAATCGTGATACTGGTATGGCTGGTTACGATTGGCTTAATTCGTTTCTAAGAAGGAATGAAGAATTAAGTGTAAGAAAATCACAGGGCTTATCTATTGCTCGAAGCCAAGGAATGAATAGAGAAGAAGCTAACCAGTTTTTTACATTGCTTCAAAAATGTTACACGGAAAATAACTTCTTTATTAAAccggaaaatatatttaacatagACGAAACCGGTTTCCAAGTAAATAACGAAGCTGGCACTGTAATTGCCACGAAAGGAACTAAAGACGTCCATACGTTAATCTCGTCCGAAAGGGGTGAAAACGTGTCAATAATAGCTTGTTGCAGTGCCGAGGGAAGGGTTTTTCCACCAGTCATACTTAAAGGGCAACGTGAAAAACAAGAGATTGGAGATGGACTACCTCCAGGCTCCAAAGTTTTTATGAATCCTAAGTCATCATACATTACTGCTGAATTATTTTTCAAGTGGCTTAGGGAACACTTTGCACCTCGTAAGCCTCCTggaaaatgcattttaattttagatgGACATGCATCCCACACAAATTCTTTTGATATGCTGGAGTTTGCCGAAACAAAtgatattatgttaatttgccttCCCAGCCATAGCTCCCAAGCACTCCAACCACTTGAcagggcattttttaaatctcCTAAATGTAATCTAAAACTTGAAGCTCGACAATGGATGAGACAACCCAGGAAGACAGCTAAAGCGGCTTCAGGCTAG
- Protein Sequence
- MPTQYNRKSGSKPRRQWKQEDLEEALRCVNSGEMGVNEASRAYSIPSRTLRRRRVQGTMTNVPLGPQGVLGIENEKRLVKHIQKLEKAGFAPDRETIRILRFQFAEKLGINYRFNRDTGMAGYDWLNSFLRRNEELSVRKSQGLSIARSQGMNREEANQFFTLLQKCYTENNFFIKPENIFNIDETGFQVNNEAGTVIATKGTKDVHTLISSERGENVSIIACCSAEGRVFPPVILKGQREKQEIGDGLPPGSKVFMNPKSSYITAELFFKWLREHFAPRKPPGKCILILDGHASHTNSFDMLEFAETNDIMLICLPSHSSQALQPLDRAFFKSPKCNLKLEARQWMRQPRKTAKAASG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186993; iTF_01187122; iTF_01187180; iTF_01187254; iTF_01187223; iTF_01187359;
- 90% Identity
- iTF_01186993;
- 80% Identity
- -