Ppla039983.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020191.1:110550054-110551859[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-12 2.4e-10 42.3 0.1 3 40 19 56 17 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGACTAAATATAAACGAAAAGGTACATTAGAACGAGGAAAATGGACTGCGGAATCCCTCCGTAACGCAATGACCGCTGTGGCAAATGGTACAATGGGCATTAATAAGGCAGCTAAAGAGTTTGGAATACCGAAAACTACATTGAAAAGGAGAGTACAGTCTAATAGGAACACTAAAACCAATCGCCTTGGACCACAGTCTCAGCTAGGAGATGAAGCGGAGAAAAAATTAGTAGATCACATCcttaagttacaaaaatatgGTTTTGCACCCGATAGAGATAGCGTTAGAAAAATGGCCTACGAACTAgcagaaaaacttaaaataaggcATACTTTTAACAGCGATAAATGCAAAGCAGGTTATGACTGgcttcaattgtttttaaatcgCCATCCAGAGATATCAGTCCGTAAAGCCGAAGGAGTTTCTTTTTCACGAGCAACAGGTTTGTGTAAAGAAAACGTTACAGAATATTTGCGTTTACTAGCTCAGattttggatgaaaatgatttgaaTGATAAACCATCGCATATATTTAATGTAGACGAAACCGGTCTCCAATTAAACAATAAACCCGGCCAGGTACTAGCCAAAAAAGGATCGAAATGTGTGGCAAACATCACTTCAGCAGAAAAAGGAGAAACGATATCCGTAGTGGCCTGTTGCAATGCTGAGGGAATGTTTCTGCCTCCATATAGTATTTTTAAGGGCAAGAATAGAAAGGAAGAATTTTCAACCGGAATGCCCCCTGGTTCATATGTTGCGATGTCGGAAAAGTCTGCATATATTAATGCCGATCTATTTCTTCATTGGTTGAAAACCCACTTCCTGCCAAGAAAACCGATTGGGAAAGTTCTACTGATCTTAGATGAACATGCTTCGCACACGAACTCTATAAGTGTGTTGGAATTTGCGGAAGAGAATGATATTATTCTTTTGTGCCTACCGGCGCATACAACACATTTCCTGCAACCGTTGGATCGGTCCTTTTTTAAGTCGTTAAAAAGCTACTATTATTCCGCCTGCAATAGCTTTATGAAAGCGAATCCTGCAAGAAAATTGGGTAGACTTCAGTTTGGTGAATTGCTGGGTTGTTCTTGGAGCAAAGCGACCACGGTACAAAATGCTGTGTCCGGATTTAGAGCAACAGGTATTGTTCCATTTTGGCCAGACATAATTCCAGAGTACGCTTACATTGCTATTAAGGAAAACGTTAATATTGCTTCTGCGGAAAACAATGTGCAGACTCCCTTGCAAAGTGAGAATTCATCCACTAACGATTTTTCCCAACCAAGTTGTTCTTATCATGTTGACCCCGTAATTAATACGCCTTTGCGTGAGAAAACTGTCACACCTGGAAAGCTACTGGATGAGATATCACCAATTCCTATTTCTACCTGTTTACAAAAAACCAAAAGACGTGGACGGCAGCTTGCAGAAATTCTGAATACGCCTGAAAATATCGAAGTTGTCAAGAATAGGAAACGTCCATTATCCAAAGCATCAGCtccattacaaaaaaaaaagattcaatTTAAAAAGGCGAAACGCCCATTAAGAAGAGCAGCTCCTACGTCCGACTCGTCTGATTCTGACAGTCTTATACTGGCTGATGAGAGTAATGACGATGAAGCGGAAGACAATGCAGAGTGCATAGGCTGTGGGGAGGAgtttcttaaaacaaaaaagaaggATGAATGGCTCTGCTGCATTATTTGCAAAGGCTGGATGCATGAAGGGTGTACCGGCTATACAAACATATGCAATGAATGTGGAAAAATAGCCGCCagaaagaaataa
- Protein Sequence
- MPTKYKRKGTLERGKWTAESLRNAMTAVANGTMGINKAAKEFGIPKTTLKRRVQSNRNTKTNRLGPQSQLGDEAEKKLVDHILKLQKYGFAPDRDSVRKMAYELAEKLKIRHTFNSDKCKAGYDWLQLFLNRHPEISVRKAEGVSFSRATGLCKENVTEYLRLLAQILDENDLNDKPSHIFNVDETGLQLNNKPGQVLAKKGSKCVANITSAEKGETISVVACCNAEGMFLPPYSIFKGKNRKEEFSTGMPPGSYVAMSEKSAYINADLFLHWLKTHFLPRKPIGKVLLILDEHASHTNSISVLEFAEENDIILLCLPAHTTHFLQPLDRSFFKSLKSYYYSACNSFMKANPARKLGRLQFGELLGCSWSKATTVQNAVSGFRATGIVPFWPDIIPEYAYIAIKENVNIASAENNVQTPLQSENSSTNDFSQPSCSYHVDPVINTPLREKTVTPGKLLDEISPIPISTCLQKTKRRGRQLAEILNTPENIEVVKNRKRPLSKASAPLQKKKIQFKKAKRPLRRAAPTSDSSDSDSLILADESNDDEAEDNAECIGCGEEFLKTKKKDEWLCCIICKGWMHEGCTGYTNICNECGKIAARKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01241751;
- 90% Identity
- iTF_01186966;
- 80% Identity
- -