Ppla079796.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020195.1:71528974-71537416[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00083 0.096 14.8 0.0 3 41 17 55 15 58 0.89 2 2 3.2e-09 3.7e-07 32.2 0.0 4 37 245 278 243 283 0.92
Sequence Information
- Coding Sequence
- ATGCCCCGCAAATACATTCGGAAGACAAACGGGCCATCATACAGTCATCAAGATTTGGTAAATGCCGTCAATGATGttcgaaacaaaaataaaacctaTCGAGAAGCTGCAAATTTTTATCATGTACCCATTTCAGTAATATCTCAAAGACTGAATGGGCGTAAAACTTCCTTGGATTCCTTTGGTCGCAGTTGCAAACCTGCCTTTACTGCAGAGACTGAATGCAAAATTGTAGACTGCCTGCTGGCCAGAGCCAGGACTGGTTATCCCTGCGACAAAGATGAGCTGCTTGATCTTATCCAGCAGTACGTACAAAGAAAAAAGGGTGAAAGTGTAGCCGAATGTACCACTACTTGTCCTAACACTGTTAGTTCAAGAAAAAAAGACAATAACACAACAATTGAAGGCAACGTGGATCATCCTACAGAAAAGGAATTAATACCTAGATTACGACCACTAAAATATGGGGAAGTGCTTACCACCCAGGAAGTACTGAATAGATTAAAAGAAGCACAGGAgcgaaaaatgcaaaaaactacAACGAAAAAAGAGAAACCAAAGGATAACAGCTTATCCAATATTAAACCCAAAAccccaaagaaaaaaacaatgaaGAGAAAAAGCTTAGAAAAGGATTTTGGCTTCGGAAAGAATAAGAAGCAaggaagtaaaaaagaaaaaatggtTTATTCGTATAAAAGAACGACAAATAGAGGTGCTtggaatgatgtcgatatggagaGAGCCATACAAGCTGTCCGCAATGGTGAAATGGGCTGGTTAAAAGCAAGCAAGTCCTTTAATGTACCTACAGCAACTTTACGTCGTCGAGCTCTTGGGAAAAACAAATTCGCTGTTAATATTGAAAAACGCTTTGGTTCTTTTCAATCTGCATTAAATAGAGACCTTGAAGCTGCAATTGTGGATCATTTGCTGAACTTAGAATCTCGTTTTTTCGGGTTGACGACAACAGATGTGCGACAGCTGGCGTATGAAGTTGCTGAAAAAATGAAGATCAAACACCCTTTTAATAACGAAACTAGGATGGCTGGAAAGGGGTGGCTTCACGGTTTTCGTCAACGTCATCCTCAATTATCATTGCGTTGTCCAGAAGCCACGTCGCTTGCCAGAGCTGAGGCGTTTAATAAACCACAGATAAGTAAATTTTTCACCAAGCTGGAACAAATCATCGACGAGCACAAAATTGAAAACACAATGATTTTTAATATGGATGAATCAGCGCTGACCACAGTACAAGTTCCTCCAAAAGTGTTTgctaaaaaaggcaaaaaacaaGTGGGCGCTATCACAAGTGCAGAGAGAGGGGTGCACACGACAGTTGTCGTCTGCATGAGTTCTGGGGGAATGTATGTACCGCCATCCATAATTTTCCCGCGCAAACGGTTCAATCCGGACTTATACGATGGAGCACCCATTGGAACTTTAAAACTTTATAACGAGTCAGGTTACATGACGGCAGATTTGTTCGTAAAGTGGATTAAACACTTTATAGATCACGTGAGGCCCATTGCAGAAAAAAAAGCTTTGTTAATTTTAGACGGCCATTCTAGTCATAAGAGCTACCAGGCGTTAGAACTGGCTAAACAAAATTCAGTCGTTCTTCTGTGCCTTCCTGCACACTGCACCCACCACCTACAACCCTTAGACGTAGGATTTTTTGGTCCCCTTCACAAATATTACAACCAAACCGTTACCCATTGGTTAAAAGGAAATCCCGGCCGTGCAGTCACAATTTATCAGGTATCCAAACTTTTTAACCATGCCTATGAAAGAACAGCTACACTTGAAATTGCAACTAGTGCGTTCCGTGCCACAGGAATATCGCCGTTTAACGCTAACATTTTTCCTGAACATCTATTTTTACCGAGTTTAACCACGGACGTGCCAGAAGCAGTACCTGTCAAAGAAGGAGAACCCCttaatgaaaatttagaaaatctgCAAGAGCCTCAAACGAATAATACAGAAATACAAGCACCCACTGTGAAACCTACAGAGCAAGAACAACTAATTTTTACAGAAGAAGTATCTCAGGATCAAGCACCAACCTGCTCTTCAAAAGAGGTCGATATACAAAATATCTTGCAAAAATTGTCACCAGTGCCTCAGAGCAACATAAGAAAAACTGTCAAGCGTAAAACTGGTGGATATCAAGACGTTTTAACCGAAAGTCCGTGTCTTCAAGGCATTCGCGAAAAGGAAATCAAGAAGAACCAAGAACAAGAAAGAAAGAACAAAAGAAACGTTGTTAAAAGGAAGCTTGTAGACAATGActcaaatgaaaataaaaatgaaaaaaaacaggagcagttaagaaaaagtaaaaGACCTGCTGTAAGGATTGTAATGGCAGACGAGACTagtgaagaagaagaagatccCTACCGTGTTAGTGACAACGAAGATGACTGTCCGTGTCTTTATTGTAACGATTTGTTCAGCAGATCAAAATCCAAAGAAACTTGGCTACAATGTCAACTTTGCCAAAAGTGGGCACATGCAGATTGTGCGGGTGTCCCCACAAAAGCAAAAAAGTTCATTTGTGATCTTTGCAAGGActaa
- Protein Sequence
- MPRKYIRKTNGPSYSHQDLVNAVNDVRNKNKTYREAANFYHVPISVISQRLNGRKTSLDSFGRSCKPAFTAETECKIVDCLLARARTGYPCDKDELLDLIQQYVQRKKGESVAECTTTCPNTVSSRKKDNNTTIEGNVDHPTEKELIPRLRPLKYGEVLTTQEVLNRLKEAQERKMQKTTTKKEKPKDNSLSNIKPKTPKKKTMKRKSLEKDFGFGKNKKQGSKKEKMVYSYKRTTNRGAWNDVDMERAIQAVRNGEMGWLKASKSFNVPTATLRRRALGKNKFAVNIEKRFGSFQSALNRDLEAAIVDHLLNLESRFFGLTTTDVRQLAYEVAEKMKIKHPFNNETRMAGKGWLHGFRQRHPQLSLRCPEATSLARAEAFNKPQISKFFTKLEQIIDEHKIENTMIFNMDESALTTVQVPPKVFAKKGKKQVGAITSAERGVHTTVVVCMSSGGMYVPPSIIFPRKRFNPDLYDGAPIGTLKLYNESGYMTADLFVKWIKHFIDHVRPIAEKKALLILDGHSSHKSYQALELAKQNSVVLLCLPAHCTHHLQPLDVGFFGPLHKYYNQTVTHWLKGNPGRAVTIYQVSKLFNHAYERTATLEIATSAFRATGISPFNANIFPEHLFLPSLTTDVPEAVPVKEGEPLNENLENLQEPQTNNTEIQAPTVKPTEQEQLIFTEEVSQDQAPTCSSKEVDIQNILQKLSPVPQSNIRKTVKRKTGGYQDVLTESPCLQGIREKEIKKNQEQERKNKRNVVKRKLVDNDSNENKNEKKQEQLRKSKRPAVRIVMADETSEEEEDPYRVSDNEDDCPCLYCNDLFSRSKSKETWLQCQLCQKWAHADCAGVPTKAKKFICDLCKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -