Pspi011048.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720303.1:30364717-30369160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1e-05 0.0033 19.1 0.7 1 23 67 89 67 89 0.98 2 12 2.6e-05 0.004 18.8 2.9 1 23 136 158 136 158 0.98 3 12 0.0063 0.99 11.3 0.7 3 23 163 184 161 184 0.95 4 12 0.031 4.9 9.1 2.1 2 23 188 210 187 210 0.92 5 12 0.0036 0.57 12.1 3.3 3 23 217 237 216 237 0.97 6 12 0.025 4 9.4 1.2 3 23 246 266 244 266 0.96 7 12 3.8e-05 0.0059 18.3 0.7 1 23 282 304 282 304 0.97 8 12 0.00087 0.14 14.0 1.5 1 22 1012 1033 1012 1033 0.96 9 12 0.0034 0.53 12.1 0.6 2 23 1062 1084 1062 1084 0.95 10 12 2.2 3.4e+02 3.3 3.7 1 21 1103 1123 1103 1126 0.94 11 12 0.25 40 6.2 0.6 3 23 1132 1153 1130 1153 0.87 12 12 3.6 5.7e+02 2.6 1.8 4 20 1153 1169 1153 1170 0.93
Sequence Information
- Coding Sequence
- ATGGGGAGGAGGCTTCATCGAGAGGACCCCTTGTTCgccaaatacaaaaaacaattcgACTTGAAGGAGTGTGTCGTCATCATGGGCGATATAAAGAAGTACGACCCCGCGAAATTTACCTTGGTCAAGCAAAAACCGAAGCCCATCAGCGTAGAAATCCTTTCGGATAACATCATTCCGAATTCCCGGAGGAATAAGTACAAGTGCAATGAGTGTCCACTGCGGTTTAAGGATTACGAGCAGTTGAAAGTACACAAGTTGGTTCACGAAGAGCCGGAAAAAGAAGAGGATGAAGAAGAAGAGGAGGGGAACGATAAGAACGGTTGTACCTCTCCCGTCGAGAGCGAAGCCGTGGTGGAATCTTCTTCCAGCGACGATGATTTAGACGATGAGCCCCCGCAGAAGTATCCGTGTAGTTATTGTCCTAAAGTTTTTAGGCACGATTACACCTACGCGAAGCATTTGAAAACGCACACATTACTGGCTTGCGTAAAGTGCAATAAAGTGGTGCACACGAAGGGCGAGCTGAATTTGCATTTGCAGAAGGAGCATAATTACTGCCCTTGTCATCTGTGCCCACAATTATTCTATTCGCAGACTAATTTGGATACGCATATAGCGCTGAAGCACGCTAAGAAGGCAGTTTTGTGCTACGGGTGTGGCGCTAAGTTTGAACACCGAGACGAGCTGAAGAAGCATCACAAGGATCATCCCGGACACGAGCAAATCGTGCACTGCAGTTTGTGTAATGCGAAATTTAAGAATGATAAGGCTTTATTGAAGCATGAGGCCACGCATTTTGGGAAGCCGGGAACTGCGAAAGAAGCCTCTAAAAAGGAGATACATCGTTGTAACATTTGCGGGATTACGTTTATTGGGAAGGAGTATTTAGAGCAGCATTTGAAGgaacatttaaataatgttttagatACGGATAATGTTAATAGTAATGTTGTTTTGGATCAGAAAAAGGTGGTTGGCGATGCGAAAAAGACGGATGTAACTAAAACGGCAGTTGCTGTTTCGGTTGCAACAACAACTACTGTTCAAGCTGGTAATATACTAAAACCTCTTTTAACCACATCAACAACTACACCactagttattaataatttgaataaacaaataataaatgccAATCAATTGAAATTGGTGATGATTAACGATAAAACATATGCAGTACTACCTGAAGATGTAACTCCAGGAAATGGAATGATACGGCTAGTTGTCAATGATCCAAATCAATCCGGTGGACAAACAGTGCTTCAAACACTTCCAGCATTACAACCGATAGGCGTTCAACCTGCCATTAATCAAACTATTGTGCTGCCGAACGCACAAACTAATTCACAAATCAGCATtaccaataaaacatataacTCGAATTCAGGGATGAATATCGTTTACGGAACTAAACAAAACGAGAATCAAAATGTGGCTAAAACACTTTTGCCTGCTATAGTTAAAGTTGCATCAGTAGGAGAAGCTGTTAGCGTGGCTGGAAATACAATGAGTGTTACTAATGCAATGAGCGGGATGAATTTAGTTTCTACTTCAGCTGGATTGATATGCACTCCGTCCAATGCAATTGGCGGCGTTGTTAACGCAACTGGAGGGGCAATTATGGCCTCCAATCCATTTATAATGGCTTCTAATACAGTGGGATTACCCTTGGGTAATGCAAGTACGTCCCAACCAAGGATTATGAGTATAAACATACCATCTTCCATGGGATCTATGGATCTAAATATTCCGCAATTGGCAGCTTTAGTAGGGACCCcccaaatcaaaataattgccTCTACAGCTGGACAACAGCCCAGTGATACAGTTACAGCTTCCGTTAATACGAATCCTACTACTACATCAGTGAATACTGTGAAAATGAGCCTACCAGTACCAACAACGGCAGCTCAACCATGTTCTAGTGGAATCAAACGAGTAGTGTATTCACCTACTGTATGCACATCACAAAACAAGTGTATAAGAATTGTAACTCCCGGCTTACAAACCACAGCAGGTGTGAAACAAGTCACTTCGAGTACACCAACCACATCAGGAATTGTAATGGTTTCAGCGAAAACCGTAAATGTGCCAACATGTACAACAACAGCTGCAAGTAAAGTGGTGAAGAAACCCGATTCGCAGGTTACTGGTAAATTATTAGGTCCTCAAATGGTTGGAGCCGCAAAATCTGGAATTCAAATTACTATGAAAAATGTAAGCCAGGCATCCACTTCTGGTACTAAGACGGTAGTTACCAGCTGTCCAACGAAATACAAATTGGGATCTACTGGAAAGATAATAGTAACTTCAACCACGACGAATCCTACCAAACCACATTCCACCAtcacaaaaaaaggaaagattatcggtattataagaaatacagTACCACCTTTGGCTGCGTTACAGGACGATCAAGGTCCGAAAATCGCAGCAACCCAACAAAATTTAGAACAAGTTGAAACAACTGCAGAACAAACTGATTTGAATATCGAAAAGGGAATGGATGTTTCGAATAAAGTTGTAAAAACTGTAAATATGCCACCGTTAATTTTTCAAACACCATCACCCGCAGAAACAAATTCCAGTTCGACGAGTTCAGATTCCACATCACAAGCTATTCCCGAATCGACTGCGCCTGACGAAAGTTCGAAATCGACATCTTCGGAGAATATAAGCACAAGTACTGTACAGGAAGCGAGTGCTCCTGAAAGTGGTATAAATCACGAATCAGAAACTAACACTGAATTAACAACTGGAGACGTAAACTCCGATTTAGTAACGACAAATCCTGAACTTCGTAAATTAGGTGAAGGTTTGAAAGACGTCCGACTGACGGTTATTCCCGAATTTGAAATTGCATCATCATCATCGGTGCCCGTAGATAAACCTAAAATCTTCTTGAAGCCCTTAAGCCAGCTCTTGGAGCAACCCGACGACCCGCAACAATCTAATGAGACGACATCCGAGGAAAAAGGCGAAGGAGAAAGTTCCGAAGCGAAAGCCGGAGGGAAAACGAAACGAACGTACAAGTGCAGCAAGTGCAATGCCGTGTGCAAACGCGCTGGAAAGCTGCTCCAGCACATGAACAAATATCGCTGCAAGCTGTGCGAGTTCACTTCGTGCACACTGAAAATCCTCGACGGGCATTATTCCGAAAAGCACGAATACAAAAACCGGTGCGTTTCATGCGACACGCAATTCCCCACACTGAGCGAGCTGCAGCAACACAAGAAAAGCGTGCATCTGTGCAGGCAGTGCAACCGCTGCTACTTCGACCTTAAGAAGCATCAGAACAACTACCGTTGCAGCAACTGTGATTTCTTCGCATGCTCTGCGGGGAATTTGGACGTCCACTATAAATGTGTTCACAGGATTACAACGCGCTGCGCACCTTGTAATGTTACTTTTTACTCGAATGAGACTTTCCAGAAGCACAAACAGGATGTGCACTATTGCGAAAGGTGTTGCAATTATAAGATGGATTTGAATGTTCATAAAACTTTCTGTAAAGGAAACGGACAACCGGCTGCGGCTTCAGTTGTTGTGGAAGAAGTGATCGATTTAGATagtgattaa
- Protein Sequence
- MGRRLHREDPLFAKYKKQFDLKECVVIMGDIKKYDPAKFTLVKQKPKPISVEILSDNIIPNSRRNKYKCNECPLRFKDYEQLKVHKLVHEEPEKEEDEEEEEGNDKNGCTSPVESEAVVESSSSDDDLDDEPPQKYPCSYCPKVFRHDYTYAKHLKTHTLLACVKCNKVVHTKGELNLHLQKEHNYCPCHLCPQLFYSQTNLDTHIALKHAKKAVLCYGCGAKFEHRDELKKHHKDHPGHEQIVHCSLCNAKFKNDKALLKHEATHFGKPGTAKEASKKEIHRCNICGITFIGKEYLEQHLKEHLNNVLDTDNVNSNVVLDQKKVVGDAKKTDVTKTAVAVSVATTTTVQAGNILKPLLTTSTTTPLVINNLNKQIINANQLKLVMINDKTYAVLPEDVTPGNGMIRLVVNDPNQSGGQTVLQTLPALQPIGVQPAINQTIVLPNAQTNSQISITNKTYNSNSGMNIVYGTKQNENQNVAKTLLPAIVKVASVGEAVSVAGNTMSVTNAMSGMNLVSTSAGLICTPSNAIGGVVNATGGAIMASNPFIMASNTVGLPLGNASTSQPRIMSINIPSSMGSMDLNIPQLAALVGTPQIKIIASTAGQQPSDTVTASVNTNPTTTSVNTVKMSLPVPTTAAQPCSSGIKRVVYSPTVCTSQNKCIRIVTPGLQTTAGVKQVTSSTPTTSGIVMVSAKTVNVPTCTTTAASKVVKKPDSQVTGKLLGPQMVGAAKSGIQITMKNVSQASTSGTKTVVTSCPTKYKLGSTGKIIVTSTTTNPTKPHSTITKKGKIIGIIRNTVPPLAALQDDQGPKIAATQQNLEQVETTAEQTDLNIEKGMDVSNKVVKTVNMPPLIFQTPSPAETNSSSTSSDSTSQAIPESTAPDESSKSTSSENISTSTVQEASAPESGINHESETNTELTTGDVNSDLVTTNPELRKLGEGLKDVRLTVIPEFEIASSSSVPVDKPKIFLKPLSQLLEQPDDPQQSNETTSEEKGEGESSEAKAGGKTKRTYKCSKCNAVCKRAGKLLQHMNKYRCKLCEFTSCTLKILDGHYSEKHEYKNRCVSCDTQFPTLSELQQHKKSVHLCRQCNRCYFDLKKHQNNYRCSNCDFFACSAGNLDVHYKCVHRITTRCAPCNVTFYSNETFQKHKQDVHYCERCCNYKMDLNVHKTFCKGNGQPAAASVVVEEVIDLDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -