Pspi013585.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720304.1:32227325-32228485[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9 3e+02 3.5 0.4 1 23 64 86 64 86 0.88 2 10 1.4e-05 0.0023 19.6 4.1 1 23 91 114 91 114 0.98 3 10 7e-05 0.011 17.4 0.2 1 21 130 150 130 152 0.95 4 10 2.5e-06 0.00039 22.0 0.3 3 23 160 181 159 181 0.90 5 10 2.5e-06 0.00039 22.0 0.2 1 23 186 208 186 208 0.96 6 10 0.0015 0.23 13.3 0.2 1 21 214 234 214 235 0.94 7 10 0.011 1.8 10.5 1.7 1 23 257 279 257 280 0.94 8 10 0.0005 0.078 14.8 2.8 1 23 303 326 303 326 0.98 9 10 0.069 11 8.0 1.4 2 23 332 354 331 354 0.90 10 10 0.021 3.4 9.6 0.1 2 21 360 379 359 380 0.89
Sequence Information
- Coding Sequence
- ATGGTTGTTCTTCCTGGTGAAGCAGTGGTCAAGAAAGAATTAATCAAGGAAGAAGACTGCTCGGAAGAACCCAGCGAAGACCCGCTTCAACTTAATAATTACAACCATTTTGATAACCTCCCTCCCGAGATAGACCTGCGCGGGGTTAAAGCTTGCAGGAAAATAATCACAACCGACGGCGCCGTCTTGTACAAATGCGACATTTGCTTGATCGAGATGAAAGACATGAACACCGTGAATATCCATTATAAGCAGCATTTCGAAGCTCCGTTCACTTGTCACATTTGCAAACAGACTTTGAGCAGGCTTTACGGCTTGAAGCGCCATATAAGGCGGAAGCATTTCGTGGACGTGTGCAGGATAACGATCGCGGATAGTTCTTCTTGTTATATTTGCGATATATGCGGGGCGACTTTTAGTAAGGAAGGCGCGTTCCGGAAACACTACAGGCCGCATATTAATCAGAAATCGGCGGATTGTGAAGTTTGCGGTAAAACGTTTTCGTCGTTGAGTTCTTTGAAGAAGCACAAAGCCGCGGTGCATTTCGCTGTTAAGTTTCCTTGTGATATTTGCGGGAAAGAGTTTACCTCGAGATGGTCGCTAACCGATCAcgttaatttccatttaaacaGGCGGCCGTACAAGTGTGTGGCTTGCGGTAAAGATTATCCCACGTCTTCCGGGCTATTCGCTCATGTCTGCAGTAAAAACTGCAAGGGATTGAACTCATACAGCCAGCAAGGTATTGATCAAGTTGAAGCAATGGAATACGTTTGCCACATTTGTATCATAACCTTTTCTAAAAGGGAGGAATTAGCCGAGCATTTCTCTGAGCATCACAAAGACGAGAGCTCGAGCACtaaggataaaaaaaatgaaatcgttATGGAGGACGGGGTGGTGAAATATAAATGCGACTATTGCAATCAAATATTCGATTACGTGAGGAACATGAAATCGCACAGGAAGAAAATGCATGGGAATATGCAGCTGAAGTGTGATGTTTGCGGTGAAGAATTTTCGTGCTTGCGGAGATTGCAATGGCATCAGGATCAAAAGCAcgttaaaaagaaaattcctTGTGATAACTGCGGAAAAAAGTATTCTTCAGGGCCGATGATGAAAGCTCATAAAATGAAATGCCAAAAGAAAACATCATGA
- Protein Sequence
- MVVLPGEAVVKKELIKEEDCSEEPSEDPLQLNNYNHFDNLPPEIDLRGVKACRKIITTDGAVLYKCDICLIEMKDMNTVNIHYKQHFEAPFTCHICKQTLSRLYGLKRHIRRKHFVDVCRITIADSSSCYICDICGATFSKEGAFRKHYRPHINQKSADCEVCGKTFSSLSSLKKHKAAVHFAVKFPCDICGKEFTSRWSLTDHVNFHLNRRPYKCVACGKDYPTSSGLFAHVCSKNCKGLNSYSQQGIDQVEAMEYVCHICIITFSKREELAEHFSEHHKDESSSTKDKKNEIVMEDGVVKYKCDYCNQIFDYVRNMKSHRKKMHGNMQLKCDVCGEEFSCLRRLQWHQDQKHVKKKIPCDNCGKKYSSGPMMKAHKMKCQKKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01185502;
- 90% Identity
- -
- 80% Identity
- -