Pspi021421.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720309.1:9279-12432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00021 0.033 15.9 0.5 2 21 198 217 197 218 0.93 2 16 6.1e-06 0.00096 20.8 0.7 3 20 227 244 225 246 0.93 3 16 0.0091 1.4 10.8 2.7 3 20 331 348 329 350 0.91 4 16 0.16 25 6.9 0.2 2 23 442 464 441 464 0.94 5 16 0.00074 0.12 14.2 1.3 2 23 472 494 471 494 0.93 6 16 0.0044 0.7 11.8 0.8 2 23 501 523 500 523 0.96 7 16 0.15 24 6.9 0.2 3 23 531 551 529 551 0.96 8 16 0.00052 0.082 14.7 1.5 2 21 562 581 561 582 0.93 9 16 4.6 7.2e+02 2.3 0.2 3 23 594 615 593 615 0.91 10 16 0.0034 0.53 12.1 0.4 3 23 651 672 649 672 0.96 11 16 0.0027 0.42 12.5 0.9 2 23 737 759 736 759 0.96 12 16 0.011 1.7 10.6 1.5 3 23 768 788 766 788 0.96 13 16 0.00012 0.018 16.8 1.8 1 23 794 816 794 816 0.95 14 16 6.8e-05 0.011 17.5 3.5 1 23 822 845 822 845 0.96 15 16 0.00036 0.057 15.2 0.6 1 23 851 873 851 873 0.94 16 16 1.4e-05 0.0022 19.6 0.7 1 19 879 897 879 903 0.93
Sequence Information
- Coding Sequence
- ATGGAAAGCGATCCGCTGTCGGATGAAACTCCCAAGAAGTTGCGGTGCAGAGTTTGCTTGGGACACACCGACGATGCAATTTGCTTGCTGCGTGTGTCCAACAGCCGTAGAGAGACCGTTTCTTATATAGATATACTGTCGTCGGTTTGTAAATTGCAGGTGAGCATCGGATCGAAATTATATTCGGGAATTAATTACGACACCCATTACTGTTTTTTACAGTCTGAGAAAGCGCCTTTAAATATCTGCCATAGCTGTGCTCGAGCGGCGGAGATATCGTACGATTTTAAGGTGTTGTGCGAGCAGTCTGATAGAGTTCTGAGGGATGAAAACGTGCCACTTTCCATCGAAGACGCTGATAAGCCCACCACCGAAACTCACTGCccggaaaatttaatttatagcaaTGAAGGAGACGCGGAAAGTCTCGATATAAAACCGAAGATAATCAACGATTCCAGTGTAAATGCGAGCCTGCAGAATGCTTCTAATTCGACCGGTGGCGTGCAGCCCCAGAAGTGCATCCTGCTATGCGTCGTCCAGAAAAATCCGCCGCAGACGACCGTAAAGAAGCCGGAAAACGCAGAGTTAAATTGTTACAGGTGTAATAAGAGTTTCTTCCGGCCGGGGTATTTGATGCGGCACATGCTGAGCTGCAACGGCAAAAACGATTTGGCGTGTCCGATGTGCAAGTACAAGTTCACCAGGAAGTCCAGCCTGAAGAAGCACATGGTCAAGTGCGTCGGGTACTCGGAGGGTGCGGATGGGGCTGAGGGAGTCGAGACTGAAATTGCTGAAGTCAACGAGGAGGATTCGGATGGAAATTTGGCAGACGTCAAGGTGGAATTCGAGGAGGATTCGATTACGTTCCACGGGGACGTTAAACTGGAACCGGAGCGTTACGGCTGCGACGAAGAATTCGAATCCACTCCGGTCGATTTATCCGAAGAGGGGGATTCGAAAAGCGGGGGTGTGGAATCGTCGTCGTGCTGCGAGAACTGCGGCTGTAAATTTGCCTTCCCGTGGAATTTGAAGAGGCACGCTTTGAAGTGCACGGCGAAGCCGTACTCGAGCTGCGATTTTTGCGATTACAAGCCCGTTTCCTTGAAGGATCACTACGAGCATTCTAAAACGCACCCGGATAGTTACGGGAGGAATTGCGTTTATTGCGATTTGCACATCTTGAAATTGGACGAATACAAGAAGCATTTAACGGAGGTGCATCAGGATAAAAAATTGGGGTGCGGTTATTGTGGGGTCGATATTTTCCTCATGCCGGATTTGAAGAAGCATTTAGAGTTGCGACATCCGGGGGAGAGGATCCGTTGTGGGTTTTGCGATTTTTCGACAGACACCTGGATTCTGTACACGGAGCACTTGAAAGGCCAGCACGATGGATTTTTCTCGGAGAAAAAGTGCAACTGGTGCGATTTTAAAACGGTGGACCAGCGGAATCTCACGAAGCACATGGAGGACTTTCATGGGGATAAAAAAACGATCGAGTGCAAGCTGTGCGGAAGCAAGTTCATCTGGTTGAACTCGCTGAAGCGGCACATGAAGACTTTCCATCAGGAGAAGCGGAGGTTCGGTTGTGAAATCTGCGGACGGATCTTAGGCTTGGGGCACTTGAAGCTTCACATGGCGACCGAGCACCCGAGCTACAAGTCGAAGAAAATAGTGAAGACTTGCGAGAATTGCAAGCAGACCTTCACGCGGCTCTCTTCTTACAGGAAGCACGTCAATTCGAAAAGTTGCCTCGTGAAAAAATTCCCCAAGGCCTGTCAGGTTTGCGGGTATAAACCGGAATCATTCAGGGATTATCAGGCTCATAAAAAAAGCGAGCATTCGGAGAGGACGTCACAAATTTGCATATACTGCGAGCACGTTTACGTCTGCTCGAACGGCTACAGGAAGCACATTATTCTGAATCATCccgaaaaacaaattaattgcaaGTATTGCACTTACGTGGTGTACACCCCGCGCGCTTATATAAACCACATGAAGAGCAAACACCCGGCGGAAAAATTCGAATGCCACCTTTGCGATTTCACCACCGATGTCACCACCATTATTTACACGCATTATTTAGAGGGGCATCAGGATTATTTCAAAGCACGCCGGTGTAAGTACTGCGACTTCGAAACTATCTGCCCGACGGTGATGGGGAAACATCTGGAAACGACGCACGACGATAAGAAAACCCTGCAGTGCGACGTCTGCGATAAGAAATTCTTCAACGTCACCATGAAGCTGGCGCACATGAAAACGCAGCACGGGGAGCAGGTCACCCCGATTATCTGCGAGATATGCGGGAAGCACCTCAAGTGCGAATACAACTTGGAGCAACACATGTACATCCATAAAAGCGAGCGGAAATTCAAGTGCAACCTCTGCCCGAAAACGTTCAAAACAAAAGCATCACTGTACGGACACAGCACGTCGCACTCGGAGGAGCGGAAGCACAAGTGTCCCGAGTGCGGGCAGCTCTTCAAAACGTCTTCGCACATGAGGAGCCACGTGAAGAACGTGCACGAGAAGAGGAAGCCGCACGCGTGCACTGTGTGCGGGCTGAGGTTCGCCAGCAGGAGCTATATGAATAAGCACGAGGCCGTGCATACGGGGGTCAGGGATTACAAGTGCGACGAGTGTGGGAAGCTGTTTGTCAGGAAGGAGCACCTGAAGCAGCACTCGCTCGGTGGTGCACACCGGGGAGAGGAAGCATGTGTGCGAGGTGTGCGGGAAGGGATTCACGCAAGCGCATGTCCTGAGGTCACATTTAAAGACGCACGATACTTAAAAAACTAA
- Protein Sequence
- MESDPLSDETPKKLRCRVCLGHTDDAICLLRVSNSRRETVSYIDILSSVCKLQVSIGSKLYSGINYDTHYCFLQSEKAPLNICHSCARAAEISYDFKVLCEQSDRVLRDENVPLSIEDADKPTTETHCPENLIYSNEGDAESLDIKPKIINDSSVNASLQNASNSTGGVQPQKCILLCVVQKNPPQTTVKKPENAELNCYRCNKSFFRPGYLMRHMLSCNGKNDLACPMCKYKFTRKSSLKKHMVKCVGYSEGADGAEGVETEIAEVNEEDSDGNLADVKVEFEEDSITFHGDVKLEPERYGCDEEFESTPVDLSEEGDSKSGGVESSSCCENCGCKFAFPWNLKRHALKCTAKPYSSCDFCDYKPVSLKDHYEHSKTHPDSYGRNCVYCDLHILKLDEYKKHLTEVHQDKKLGCGYCGVDIFLMPDLKKHLELRHPGERIRCGFCDFSTDTWILYTEHLKGQHDGFFSEKKCNWCDFKTVDQRNLTKHMEDFHGDKKTIECKLCGSKFIWLNSLKRHMKTFHQEKRRFGCEICGRILGLGHLKLHMATEHPSYKSKKIVKTCENCKQTFTRLSSYRKHVNSKSCLVKKFPKACQVCGYKPESFRDYQAHKKSEHSERTSQICIYCEHVYVCSNGYRKHIILNHPEKQINCKYCTYVVYTPRAYINHMKSKHPAEKFECHLCDFTTDVTTIIYTHYLEGHQDYFKARRCKYCDFETICPTVMGKHLETTHDDKKTLQCDVCDKKFFNVTMKLAHMKTQHGEQVTPIICEICGKHLKCEYNLEQHMYIHKSERKFKCNLCPKTFKTKASLYGHSTSHSEERKHKCPECGQLFKTSSHMRSHVKNVHEKRKPHACTVCGLRFASRSYMNKHEAVHTGVRDYKCDECGKLFVRKEHLKQHSLGGAHRGEEACVRGVREGIHASACPEVTFKDARYLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -