Pspi024985.2
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- prdm10
- Assembly
- GCA_963082785.1
- Location
- OY720310.1:19975782-19987870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.027 4.3 9.3 0.3 2 23 23 44 22 44 0.94 2 11 0.00015 0.023 16.4 0.1 1 23 120 143 120 143 0.97 3 11 2.1e-06 0.00033 22.2 0.8 1 23 162 184 162 184 0.99 4 11 0.015 2.4 10.1 2.8 2 23 193 214 192 214 0.97 5 11 0.015 2.4 10.1 1.7 1 20 221 240 221 243 0.92 6 11 0.0052 0.83 11.5 2.4 1 23 249 272 249 272 0.96 7 11 9.4e-06 0.0015 20.2 1.0 1 23 277 299 277 299 0.98 8 11 2e-05 0.0031 19.2 5.0 1 23 305 328 305 328 0.92 9 11 0.0074 1.2 11.1 1.1 1 23 355 378 355 378 0.97 10 11 1.9e-05 0.003 19.2 2.2 1 23 400 423 400 423 0.97 11 11 0.001 0.16 13.8 3.4 2 23 461 483 460 483 0.96
Sequence Information
- Coding Sequence
- ATGAGTTATGCACAAAAGCGCAACCTCCCGGTTTTGGAACCTCAGGCGAATGAAGAAGACCTGTGGCCGTGTTACGAGTGCACGCAGAAATTCTTAACTTCCGAGCTTTTGCAGAAACACCTCGACGAGCACGATGCAATTAATGGTCAGCAAAACAACtcgaaaaagaagaagaaacgaGTAAATTCTCCGCAGCAGCCGCAACCTCAAAGTATCACCAAAGATACTTACTTGCAGTGCACCACTTGTCTGGAAATTATCACCTCGCAGAAAGTCTCCATTTTGCAGCAGCATTTGATTGGTCATGGGTTGAACCCACACGAGCCGCTACAGGATAGATTCATATTGGCAAaATGTTTTACTTGTGGTGAGTGTGAGGTGATTTTTACAAATGAAAATGAGCTGAATGAGCATATCCAGAAAGAGCACTCCGAGGATAAAGTGTCGACTCCTGTTCAAAAAGAGCAGAGCTCAAAGATGGAGTACAAGTGCCCATTTTGCTACAAGATTTTCGCTTCCAGTGATCGTTTACAGcgACACATGTTGGTTCATGGCTCCGAAGAATCCAAACCACTACAATGCGACAAGTGCAACAAACGGTTCTTGAACAACTCAGCCCTCGCTTGCCATTTAAAAACGCACCTTTTGGGCCGTAAAGTCTTCGAATGTCCCATTTGCAAGGAGAGTTTCCATCACGTCCTTCAGTTGAAGCTCCACGTGCCGAAGCATTGCGTCGACGGCAATTACACCTGTCCGCATTGTTCGAAACAATTTGAGAAGTACAGCATTATCCGGAAGCATATTAGGGGCTCACACTGTGAGCGGAAGCACACATGTCCCGATTGTTCGAAGCCGTTTCCTACTTTGGATAAATTAAGGATGCACCTGTTGAAACATTCCGATTTTCGTGAATTCCAGTGCTCCGATTGCGGGAAACAGTTCAAGAGGAAGGATAAGTTGAAGGCGCACTGCAAGAGGTTGCATTCGGAAGAAAGGGAGAATGCAATACCAGAGAAGAAGTTTACTCCGAAGGTGCAGCCGACGGATTATTTgcgatttatttacaaatgtcaTGCATGTCTCGTCGGATTTAAAAGAAGAGGTATGTTGGTGAACCACTTGGCGAAACGCCACCCAGACATCAGCCCTGATTCAGTCCCCGAACTAAACCTGCCGATCTTACGAGCCACAAAAGACTACTACTGCAACTACTGCGACAAAGTCTACAAATCCAGCTCAAAAAGAAAAGCACACATCTTAAAGAATCACCCGGGCGCGACTTTACCGCTCAGCAACCGACGACTGGACGCATCCAAAGCAAATGACCTGCCCAACCCGACATATTCGCAAACTGTGGGAAGTATTACGACGCACCCCCAGTCCTGTCAGTGGTGTCACAAACAATATGCGAGCAAGGCGAAGCTGTTGCAACATCAAAGGAAGAAGCACACTGATTTGTTGCCCCCGCAACAAAGtgggaataataataacaatgttaaATCGGAGAGTAACGATGGTTTGATTGGTGAGATTGTGGAGCAAGACGGGCATTTCTTCCATTTTGTATCGGTGGACGATCCACATTTCGGTCAAACTGACTTGAGTGGGGATTCTAGGTTATACAGATTATTAACCACTGGAAATAATCTAGCGTGCTCATCAAGGGGAAGCATTTGCATGTGCATGTGCACTTTCGTCAGCTTTAGTCTTGACGATGTGTCCATGGCTCTAAATCATTCCGCTGTCAGCCTTGCCACTTCTTTGATGTGA
- Protein Sequence
- MSYAQKRNLPVLEPQANEEDLWPCYECTQKFLTSELLQKHLDEHDAINGQQNNSKKKKKRVNSPQQPQPQSITKDTYLQCTTCLEIITSQKVSILQQHLIGHGLNPHEPLQDRFILAKCFTCGECEVIFTNENELNEHIQKEHSEDKVSTPVQKEQSSKMEYKCPFCYKIFASSDRLQRHMLVHGSEESKPLQCDKCNKRFLNNSALACHLKTHLLGRKVFECPICKESFHHVLQLKLHVPKHCVDGNYTCPHCSKQFEKYSIIRKHIRGSHCERKHTCPDCSKPFPTLDKLRMHLLKHSDFREFQCSDCGKQFKRKDKLKAHCKRLHSEERENAIPEKKFTPKVQPTDYLRFIYKCHACLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILRATKDYYCNYCDKVYKSSSKRKAHILKNHPGATLPLSNRRLDASKANDLPNPTYSQTVGSITTHPQSCQWCHKQYASKAKLLQHQRKKHTDLLPPQQSGNNNNNVKSESNDGLIGEIVEQDGHFFHFVSVDDPHFGQTDLSGDSRLYRLLTTGNNLACSSRGSICMCMCTFVSFSLDDVSMALNHSAVSLATSLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -