Pspi035821.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720317.1:10361116-10374791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 46 6.0 2.6 2 23 267 289 266 289 0.94 2 12 1.7 2.7e+02 3.6 0.0 2 20 294 311 293 313 0.86 3 12 0.00032 0.05 15.4 0.1 2 23 320 342 319 342 0.95 4 12 1.3e-06 0.0002 22.9 0.2 2 23 347 368 346 368 0.97 5 12 5.3e-05 0.0084 17.8 4.3 1 20 374 393 374 396 0.94 6 12 1.9e-05 0.003 19.2 1.6 1 22 402 423 402 423 0.96 7 12 0.00088 0.14 14.0 1.0 2 23 432 454 431 454 0.97 8 12 0.011 1.7 10.5 1.3 2 23 467 488 467 488 0.96 9 12 3e-05 0.0048 18.6 5.7 1 23 494 516 494 516 0.98 10 12 0.00012 0.018 16.7 1.8 3 23 524 545 522 545 0.94 11 12 4.8e-07 7.5e-05 24.2 0.2 2 23 552 573 551 573 0.97 12 12 5.5e-06 0.00086 20.9 0.8 1 23 579 602 579 602 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAGAGCTTTTCCCGGAGGAGGTACTTGATTTACCAGCCCCCCAAGCTGAAGAGCAGCATGGAAGTAGACAAAATCTGCTGTTTGTGCTTTACGAACGAGAGTTTGCTGAAACTGAGTGGGTACAAGTGGAACAACGCCAATCTCTTCGAGATACTGAAGTATTGTTTACCGCTACAGGACTTCACTGATGATTGGCACTATCAATCATTATGTGCGAGCTGCATATCCGATTTGCTCCAAACGTACAAATTTCTGAACAAATCCTACACGGCTTGCGAGATCATCCAGAAAAAAATGAGCCCTGATTACGAGACAGACGCTTCTGCTCCCAATGAGAAAAACTTTCACAAAAAAAGTGTAACCGACACAAAGGGCTCCGATGGGCAGATATCGGAAGAAGAACGCGAGTTCCAAAAgcaaataactcgaaaatacaAGTTGCTGCAAGAAAAACAGAGTGTTCATGCAAAGGAAGAGCCACAGCAACCTCTGAAATCGGAAAAGAAAGCGGTTAAAGTCGTAACTGTTCAGGCTAATAAGAGACAAATTGTGATGGATGATTCCAAAGAAGCGAGCACGAAGGAGaagtatttttcaaaaaagCCGAATATTCAGGAGCAGTTGACTCTTAAGGATGAGGACGAGGAATTGCATTTGAATGGAGGAGTCGAGGAGGGGAgtttgattaaaaagaaaagagtcTTCAAACAGGAGGATGATAAGCCTTACCAAAACGAATCAGATGATTACGAAGGCGATGAAATGTATGAAACCCCCGAATCCCCATCGATTAAATGCAAGTTTTGCACTTTAAAGTTCGTACGCCATGAAGTTTATTTGCAGCACTTGAAGGATCAGCACATGAGTAAAACTGAGTGCGATAATTGCGGAGAGCCGGTGAGCAATGGGGAATTGGAGGAGCATAAAGCCGTCTGTAGTTTAAACGAACTCAAATGTAAAGAATGTCCTGAGGTGTTCAATTCCAGGAGGGAAGTTGAGGAGCACATCGAGAAAGCCCACGAGAAGAAAGTTGAGTGTACCATTTGTCAAGAGGTTTTCAATTCGAAAGATTTGTTGCAGAAGCACATTTTGACTCATACCAATGGCAGCAAGTTTGTTTGCAATGTATGCGGGAAGgagtttagttttaaatttaatttgcaaagGCATAAGATGTGCCACCAGGGGATTAAGCCGTTTTCCTGTCAACGGTGTGGGaaagaatatacACAAAAGAACAACCTAAAACTCCACCAAAAAACATGCGAGCAAAAACCTAAGGAAGTAAAATGCAGATACTGTCTGCAACCTTTCGAAGACTCCTGCGCTCTGACAAATCACATCCGGAGCGAACACAACATCGAGTACCAGCACATCGGACCACACGATCGCGTCTGCAAAATCTGCAACAAGGAATTCCGCTGCCGTGCCCTTCTCGTGGAACACCAAACGATACACACTGGCGAGAAAAACTACCCGTGCCACATTTGTAAAAAACGGTTCCGGTTGAACCTCCACTTGAAGACACACATGCTAACGCACACCGAAGAGAGAAAATTCGGGTGCGAGCTTTGCAATATGAAATTCAAGCAAAAATCTCATTTGATGTATCACATGTCGGCTATTCACGAGGGGGATAAACGCTGGAAATGCCAGTACTGCGGGAAAGGGTTTAATTTGAAAGGGAATTTGACGGTGCATATTCGGATTCACACCGGAGAAGCGCCTTACATTTGTCAGGTTTGTAACAAAGGGTTCATCGACTCGAACAGGCTGAAGAAGCACTTGAGGACGCTGCACGTGGATGAGTCATGCGAGTGA
- Protein Sequence
- MKKSFSRRRYLIYQPPKLKSSMEVDKICCLCFTNESLLKLSGYKWNNANLFEILKYCLPLQDFTDDWHYQSLCASCISDLLQTYKFLNKSYTACEIIQKKMSPDYETDASAPNEKNFHKKSVTDTKGSDGQISEEEREFQKQITRKYKLLQEKQSVHAKEEPQQPLKSEKKAVKVVTVQANKRQIVMDDSKEASTKEKYFSKKPNIQEQLTLKDEDEELHLNGGVEEGSLIKKKRVFKQEDDKPYQNESDDYEGDEMYETPESPSIKCKFCTLKFVRHEVYLQHLKDQHMSKTECDNCGEPVSNGELEEHKAVCSLNELKCKECPEVFNSRREVEEHIEKAHEKKVECTICQEVFNSKDLLQKHILTHTNGSKFVCNVCGKEFSFKFNLQRHKMCHQGIKPFSCQRCGKEYTQKNNLKLHQKTCEQKPKEVKCRYCLQPFEDSCALTNHIRSEHNIEYQHIGPHDRVCKICNKEFRCRALLVEHQTIHTGEKNYPCHICKKRFRLNLHLKTHMLTHTEERKFGCELCNMKFKQKSHLMYHMSAIHEGDKRWKCQYCGKGFNLKGNLTVHIRIHTGEAPYICQVCNKGFIDSNRLKKHLRTLHVDESCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -