Pspi012693.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720304.1:19752112-19791632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00096 0.15 13.9 3.5 1 21 26 46 26 47 0.96 2 17 0.43 67 5.5 3.2 1 23 55 78 55 83 0.89 3 17 0.0014 0.23 13.3 2.4 1 20 126 145 126 147 0.93 4 17 5.4e-05 0.0085 17.8 0.8 1 23 155 178 155 178 0.97 5 17 0.00012 0.019 16.7 2.6 1 20 198 217 198 219 0.95 6 17 0.0047 0.73 11.7 1.9 1 23 227 250 227 250 0.97 7 17 0.0039 0.62 11.9 3.4 1 20 270 289 270 291 0.93 8 17 0.0012 0.18 13.6 1.2 1 23 299 322 299 322 0.92 9 17 1.3e-05 0.002 19.8 3.2 1 21 338 358 338 359 0.96 10 17 0.00063 0.099 14.4 1.7 2 21 386 405 385 406 0.94 11 17 0.28 45 6.1 0.4 1 16 414 429 414 431 0.90 12 17 0.0026 0.41 12.5 2.4 1 19 444 462 444 464 0.97 13 17 1.8e-05 0.0029 19.3 2.8 1 23 473 496 473 496 0.97 14 17 0.00048 0.075 14.8 4.6 1 21 519 539 519 540 0.95 15 17 0.00014 0.022 16.5 1.5 1 23 548 571 548 571 0.98 16 17 0.00016 0.025 16.3 3.5 1 21 606 626 606 627 0.96 17 17 0.0039 0.62 11.9 7.4 1 23 635 658 635 658 0.92
Sequence Information
- Coding Sequence
- ATGGCTGCTGTGGAGCATAAAGTTTTCTGGGTGCTTGAGTTCGCAAAAAATTACTCATCGCCCAAAGCCGGAAATTTCCAATGTTTACGCTGCTCGAAGATCTACAAATACAAGCACAACCTGAACCGACATCTGAATTTCGAATGCGGCGTCGAGCCGAAATTCTCATGTCCACGCTGCTCCTACAAAGCCCACCAAAAGTCCAGTGTTCAGAAACATTTTCTCAGTAGACACATAGATATTAATCACCATGTAATTACGGTTTTAGTTGCGATTCCTGTGGTAAGACCTACAAGCACAAAAGAAACCTTTACACTCACAGAAAGTTCGAGTGCGGAAAACCGCCCAGTTGCACATCAAGGTACCACGACCGTCCATTCCTGTCCGAAATGTTTccgaatttataaatacaaacaaaacctGAGAAGACACGAAATGTTCGAATGTGGAAGAGTGGCTATGTACAAGTGCGAATACTGCGGCGTGAGCAAATACCAAAAATCAAATTTGCAGAATCACATGGCTCGCGTGCATAAAGTCGTTAAGCTTTCGCACGAAATTTATTTTGCGTATCGAAAAACGCCGGCCGTCCATTCCTGTCCGAATTGTTTCCGGACCTATAAGTACAAGCAAAACCTCAGGAGGCATATGACTTTAGAATGTGGGCGAATGGCGATGTACAAATGCGAGTTCTGCGGCGTCGACAAATATCACAAGTCCAATTTGCAGGACCATATGTTGCGCGTGCATAAAATTGTAAAGCGTCCGGATGAAATACAATTTGCAGATGAACTTGGACAAACAATTCACACCTGCGGAAAGTGTTTCAGGAGGTACAAATACAGAAAGAACCTGCGAAGGCACGAGCAATTGGAATGCGGAAAACCCGGGATGTACAAATGCGAATACTGCGGTGCAAGAAAATACCAAAAATCCAATTTACAGGATCACTTGTATCGGGTTCATAACGTGGTTAAACATGCGAtttatgAAGACACGATTGAGGGAATATTTGAGTGTTACAAATGCGGTAGGAGTTACAAGCACAAACGGAATCTGTGGAGGCATTTACGGTTCGAATGCGGCATAATAGCTCAATTCCAGTGCGATTTTTGTGACTTCAGCGCACACCTTGGGACAAACGACGAAAGTCTCCGATGTTCCAAGTGTTTTAGAGCTTACAAGCACAAGGCGAGTCTGTGGAGACACCAGAAGCTGGAATGCGGCAAACCCGCCAGATACAAGTGCAACTATTGCAATGTCAAGGCTCGACAGAAGATTAACCTGCACTCCTTTCTGAATTCTTACGACACGAGCCAAGACGAGAGCCACCAATGTTCGAAATGTTTAAAAGTGTACAAGCACAAGGCGAGCCTCTGGAGGCACGATAGGCTCGAATGTGGACAGCCGGCGAAGTTCAAGTGCAAATTTTGCGACTTCAGGACTCGACAGAAAGCTAATTTGCGCAGACACATGGGCACGCTGCATAAAGTTATCATGGACCTGAAGGATATCCAAACAAATTatatcccatatacacattttattgCTTTTCACGAATGTCCGAGGTGCAATAAGAAATACAAACACCGGAAAACTCTGAATCGGCACTTGAACTTCGAATGCGGGCTGCCCGCGAAATTCAAGTGCAATTTCTGCGATGCGTCCGCCCATCAGAAAGTTAACTTGCAGCGGCACATTCAAACTGTACACAACAAGTCTGTCTGCATTCTCATTCTACCAGGATTCGGTATAATCTTCCATATTATTAGACATGAAAGAGATTTTGTCCCGTATGATAGTTCCAAAGACACCCACCAGTGCTTAAACTGCGGTAAAACTTACCAGCACAAGAAGACCTTGATGAGGCACATGAAACTGGAGTGCGGCCAGCTTGGAAAATTCACCTGCCACTTATGCAGCAAGCCTTTCCACCATAAATTCAGCTTGCAAAGACATCTGTTTGCGATGCATCAATTTATACTGCAAACGAACAAcacttga
- Protein Sequence
- MAAVEHKVFWVLEFAKNYSSPKAGNFQCLRCSKIYKYKHNLNRHLNFECGVEPKFSCPRCSYKAHQKSSVQKHFLSRHIDINHHVITVLVAIPVVRPTSTKETFTLTESSSAENRPVAHQGTTTVHSCPKCFRIYKYKQNLRRHEMFECGRVAMYKCEYCGVSKYQKSNLQNHMARVHKVVKLSHEIYFAYRKTPAVHSCPNCFRTYKYKQNLRRHMTLECGRMAMYKCEFCGVDKYHKSNLQDHMLRVHKIVKRPDEIQFADELGQTIHTCGKCFRRYKYRKNLRRHEQLECGKPGMYKCEYCGARKYQKSNLQDHLYRVHNVVKHAIYEDTIEGIFECYKCGRSYKHKRNLWRHLRFECGIIAQFQCDFCDFSAHLGTNDESLRCSKCFRAYKHKASLWRHQKLECGKPARYKCNYCNVKARQKINLHSFLNSYDTSQDESHQCSKCLKVYKHKASLWRHDRLECGQPAKFKCKFCDFRTRQKANLRRHMGTLHKVIMDLKDIQTNYIPYTHFIAFHECPRCNKKYKHRKTLNRHLNFECGLPAKFKCNFCDASAHQKVNLQRHIQTVHNKSVCILILPGFGIIFHIIRHERDFVPYDSSKDTHQCLNCGKTYQHKKTLMRHMKLECGQLGKFTCHLCSKPFHHKFSLQRHLFAMHQFILQTNNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -