Pspi029142.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720313.1:6847344-6879609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 2.7 9.9 2.4 1 23 293 315 293 315 0.94 2 13 0.00031 0.049 15.4 0.3 1 22 320 343 320 346 0.92 3 13 0.0025 0.4 12.5 1.6 2 23 390 412 389 412 0.94 4 13 4.1e-06 0.00065 21.3 1.0 1 23 418 440 418 440 0.98 5 13 0.00045 0.071 14.9 0.3 1 21 445 465 445 468 0.89 6 13 2.2e-05 0.0034 19.0 3.7 1 23 474 496 474 496 0.98 7 13 3.7e-06 0.00058 21.5 2.6 1 23 502 524 502 524 0.93 8 13 3.1e-05 0.0049 18.5 5.0 1 23 530 552 530 552 0.97 9 13 2.4e-06 0.00038 22.0 0.6 1 23 558 580 558 580 0.98 10 13 1.4e-05 0.0023 19.6 7.0 1 23 586 608 586 608 0.98 11 13 0.00055 0.087 14.6 4.1 2 23 615 636 614 636 0.97 12 13 0.00017 0.027 16.2 1.7 1 23 642 664 642 664 0.98 13 13 1.7e-07 2.7e-05 25.6 0.8 1 23 670 692 670 692 0.98
Sequence Information
- Coding Sequence
- ATGGACGTCCCGTCGTTGATGTGCGATTCCCCGATATGCAGACTCTGCGGGGAAGAGAACCACAACGGCACCCTCATCTTCAGCGACGACCCCGACAAGGAGGACATCTCGCGCACCATCAACAAGTATCTGCCGATAAAAGTGGAAAAAGATGAACCTTTTCCGAATTCGCTGTGCCCTGGGTGCAATATACAGATCGAGGCCACCAAATCCTTCTTCGATCTCATCATCGCTGGACAGGAGAAGTTAAGGGGTCTTCACAGCCGGGAAGTGGAGGCTAGAAAGAGACAGGAGAAGCAGAAGCGGGAGTTTGAAGATGTGTTGAAAGTTGTCAATCCGAATTCTTCCATGCAGACGTATTCCGTTCAGGCTGATGATAATGGGGAAAAGATTTATATACAAGATGGACCTCTTTTCTCGCCCGATCATGAGATGTCGCTGCGAGTCGAGGGTCTGGAAAAGCCGAAAAGGAAAAAAGGGAGGCCGTTAAAGGCCTCTCAAAACCCACCACCTGAACCAGAACCGATTGTGGAGGTCCCCAATAAGGAAGCCGAAGAGGAAACGGAGGAGTTAGATGGAAAGAAAAAGAGACGGATAAAGAGGCCAGTGAGATATTCAGAACTTATACAGggtAAAGAACTGGAAAGATTATTCAAAGAACAAGGTGTAATCGATGAAGAAGATTATGTAAAGTCTGAAGAAAATGACACAGAACGGCATGATAAAACTGCCAGTGAAACAAATGAAGTCATCGGGCATATGGAGGGAAAAGACGGGGAGAATTTAGGCCAGCTGGTAATGGTCAAAGGGGGCAGCAAGCTCCGCTTGAAGTGTAAAAACGGCACAGGAAATTCTTCGCCgaagaaaaaagagaaatataaaTGTGACCTCTGCGGCAGATCGTTCCTGCATTTAAGTAGATTGGAGATACATAAATCCTTCCACAAGAATATAAAGTACCAATGTGGGACAAGTGACTGTGATAAGAGCTTCGAGACGAAGACTGCTCTTGATGAGCATCAGAAAGAAAGTGAACATACTGGTTCCAGTTTAATAGAATGTTTGGAGAATTATGGTCAAGTGCAATTACTTCCGCAAACGAATCCTGAAAATTGTACTTTACCACAAACAGAAGATGAAGTTAAGACGAGCAACGAGTCAAAAATAATGTGTGACATCTGTAACAAAACCTTCACTTGCCAGCGCAATTTTGATGTGCACATGAAAGCCGTTCATGAAAATCAAAAACCCTACGCCTGCGATAAATGCGACAAAAAATTCCCCTACTTAAACAGCCTCAAAAGCCACATGCTCACCCACAACGTAAAAACCTACCCCTGTGAATTCTGCGATAAAGTCTTCCAACATCCGAGCAGCTTGGTTTACCACGGAGAAGCTGAGCATAATAATGGCCGGAAATTCGTCTGCAACAAATGCAAAAAAGAGTTTAAGCACAAGCAACTTTTGTTGCGGCACCAAATTGTGCACACTAATGAAAGGCCGCATACTTGCACCTATTGTGGGAGGAGTTTTAAGAGGAGGGTGAATTTGTTGACGCATATGCCAACACACACTGGGGTTAAAAAGTATTGTTGCTCACTGTGCGGGCAGTCGTTTTCGCACAAGACTTCCCTGACGCTGCATTTGAGGTGGCACAAAGGGCAGAAGCCTTTCGAGTGCGACGTTTGCTCCAAGAAGTTTTCGCAAAGAGGGAATTTGGCCGAACACAAGAGGATACACACAGGAGAAAAACCGTTCTGTTGCAATTTCTGTGGACGTCGATTCACAACTTCATCCCAATTCAAACTACATATGAAACGTCATTCAGGTGAAAGGCCATGGAAATGCGAATATTGCAGCAAAACTTTCTTGCACAAAGACACTTGGAAGAGTCACATGAGGAGGCACAGGAATGAAAGACCGTACCAATGTCAACAGTGTTTCAGAGGATTCACTGAACAATGGTCTCTCAAAAAGCACGAGAGGCTGCACACGGGCGAGAAACCACATAAGTGTGAAATATGCGGAAAAGCCTTTGCGGACACTTCAAACCTGGCGAAACACAGGAAAGTCCATGCCAAGGACAAAACGGCAATAAAAAACGACCCTTCAAATGTCATCAACGTTAGTATCTCAGGAAATGGACAGCAAGATTCAAGTGATATTTTGTATGTAACTTATGAACAATGTTCACCTACTGATCAAGGAACATTGGTACATATCGTTGATACCATGAATGAAACGAGCGGTGGAAAGAATGATGCTTTCTACAACACAGCCATTTCCAAGGTGGTTGAAGAAAATCCAGCTGATCCGATGGACATCCAACTGCagcaaCTTGTGGATAATGATGGCAATGCAATCAGCTTAACCACAGACGATGGCcagcaaataaaaattgtatcgaCTGTTGTTGATGACGAACAAAGCATCATACAAGGATTGTTACCTGATGGAACTTTAATTCCGATTAATCTAGCAGTGCAGGACGGAAAACCGGTTGCTGCTGAAATCGAACCAAAGAAAAACATCGTCGATATAaaggaaaACATTCTTTTACTTCCCCATACAACTCAGCAAATGGACGACATCAAGCAAGATTTAGGGGAGCAGAAGTTACAATTCTTATCAGAGGACGGGCAAACAGTTTGTTTTATATCATCATTCAATGACGGCAATTTCATCGGAATGcaataa
- Protein Sequence
- MDVPSLMCDSPICRLCGEENHNGTLIFSDDPDKEDISRTINKYLPIKVEKDEPFPNSLCPGCNIQIEATKSFFDLIIAGQEKLRGLHSREVEARKRQEKQKREFEDVLKVVNPNSSMQTYSVQADDNGEKIYIQDGPLFSPDHEMSLRVEGLEKPKRKKGRPLKASQNPPPEPEPIVEVPNKEAEEETEELDGKKKRRIKRPVRYSELIQGKELERLFKEQGVIDEEDYVKSEENDTERHDKTASETNEVIGHMEGKDGENLGQLVMVKGGSKLRLKCKNGTGNSSPKKKEKYKCDLCGRSFLHLSRLEIHKSFHKNIKYQCGTSDCDKSFETKTALDEHQKESEHTGSSLIECLENYGQVQLLPQTNPENCTLPQTEDEVKTSNESKIMCDICNKTFTCQRNFDVHMKAVHENQKPYACDKCDKKFPYLNSLKSHMLTHNVKTYPCEFCDKVFQHPSSLVYHGEAEHNNGRKFVCNKCKKEFKHKQLLLRHQIVHTNERPHTCTYCGRSFKRRVNLLTHMPTHTGVKKYCCSLCGQSFSHKTSLTLHLRWHKGQKPFECDVCSKKFSQRGNLAEHKRIHTGEKPFCCNFCGRRFTTSSQFKLHMKRHSGERPWKCEYCSKTFLHKDTWKSHMRRHRNERPYQCQQCFRGFTEQWSLKKHERLHTGEKPHKCEICGKAFADTSNLAKHRKVHAKDKTAIKNDPSNVINVSISGNGQQDSSDILYVTYEQCSPTDQGTLVHIVDTMNETSGGKNDAFYNTAISKVVEENPADPMDIQLQQLVDNDGNAISLTTDDGQQIKIVSTVVDDEQSIIQGLLPDGTLIPINLAVQDGKPVAAEIEPKKNIVDIKENILLLPHTTQQMDDIKQDLGEQKLQFLSEDGQTVCFISSFNDGNFIGMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -