Pspi000774.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philonthus spinipes
Gene Symbol
SNAI1
Assembly
GCA_963082785.1
Location
OY720299.1:12337735-12347593[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3 4.7e+02 2.9 0.1 3 11 66 74 64 80 0.66
2 13 0.00034 0.054 15.3 0.1 1 23 322 344 322 344 0.95
3 13 3.4e-05 0.0054 18.4 1.6 1 23 352 374 352 374 0.99
4 13 1.3e-05 0.0021 19.7 0.2 3 23 383 403 381 403 0.97
5 13 5.5e-06 0.00086 20.9 1.0 1 23 409 431 409 431 0.99
6 13 8.5e-05 0.013 17.2 1.4 1 23 438 460 438 460 0.99
7 13 0.0002 0.032 16.0 1.6 1 23 466 488 466 488 0.96
8 13 2.5e-05 0.004 18.8 0.1 1 23 494 516 494 516 0.98
9 13 8.6e-07 0.00014 23.4 1.2 1 23 522 545 522 545 0.96
10 13 3.5e-06 0.00055 21.5 2.5 1 23 551 574 551 574 0.96
11 13 1.9e-05 0.0031 19.2 2.5 1 23 580 602 580 602 0.99
12 13 2.5e-05 0.0039 18.9 0.3 1 23 608 630 608 630 0.97
13 13 0.00083 0.13 14.1 0.0 1 23 636 660 636 660 0.94

Sequence Information

Coding Sequence
ATGGAGGTCGTCGCTGAAGTTGAGGATAATCCTCACTGTTTGGTCTGCTTCGGCAGGATCGGCGTTTCTGGCAGGAATTCAGTGGATATTTTCAACAAAGAGACGCAAACATGCTCGGAGAGACCGCTCAAGGACATTATGTCCCAAGTGCTGTCGGTGGAGCTGCAGAAGGACGAGGTGCACTCCCCGGTAATTTGCAAGAAGTGCTTCAAGCAATTCAACGAGATCGACGAACTCGAGCTGAGGATGAACGAACTGAAGGAGGATTTGATGAACGGCTACCAAAAGACGTTGGCCAAGGTGAACGCGTTGACGGACAATGACGATGAGGAGAAGTTCTCGACAGTCGGAGAGACAAACAAGGAGAATCAAATGCCCAAGAAAATACTCGATATACCGTCCTCGGATGACGAATCGGCAcagacAACGATGCCGCCGAATAAAAAACCAAAGCTGCAAACGATCGAAGAGATCGAGATGGAGCTGGTGAAGATCCACGGGGGAGTCGAGAAGGACGAGCCCAAAACGGGAAAGGAagaagaggaggaagaagatATGGAAAATTCGAACCATCAAACCGTTTACAGTTTCAAGAACGATTCCAACCAGGGCGGGTCGAGTGTGGACGAGGAAATTGAGAATAATCAGGATAATACAGACGCTCTTTTGGAAGCGGCGGCCATCGCCGAGAGGAGTTTGGGGACGAAGATAAAGATCGAGGAGAATTGCGAGGAGGATAATTCGAACGTGCTGAAGAAGAAGGCGAACAATGTTATGGCCATGAATAAAAAGGAGGGAGGAGGGTCGGTTAAGAAGATCAAGGAAGAGTATTCGAATAACGTGAATATGGTTTCACGTGACGGTGACCTATACACATGCCTGCTGTGCGAGGGTGACGAAACAGTGTGTGGGGAAGCCAAAGCGATCACACAACACATCAAAGTTGTACACGATGCTCGCATCTACATCTGCGATGTTTGCGGTGAGGATTTCAGGAAGCGCAACGACCTGTCTGTACATCTGGACGAGCACGTTGCTACAGAAGAGGGTGACTTCCAGTGTGAAGTGTGCAACAGGATTTTCAGCAATTTGAGGCTATTCCGCATCCATAAGAGGATGCATTATCCACAGAGCAAGGCGTGGGCTTGTGATACTTGTGGGAAGAAGTATagttCACGTAATTTATTGGAAGAACACATCAACACTCATACAGGAGTCCGGCCTTATGTTTGTCCTGTCTGTAAGAAAGACTTTGCCTCCAAGTACACATTTAAGGCTCATGAAAAGACACACGAGGTGAGGCCGAGGCCCTTCCAGTGCAGCCAGTGCAGTAAATCTTTCTTGAGTCAGCAAAATCTGTTGGCTCATGAGCGAACGCATTTGGGAGTTAAGGAATTCCAATGTCATTTATGTGaaAAACAATTTGGTTCAGCACACAATCTAGAAGTACACTCGATCGTCCATACTGGATACAAGCCCTTCATATGCGGTTTATGTGGCAAAGCTTTTGCCCGCAAAGCAGAAATCCGCGACCACGAGCGGACCCACACGGGTGAGCGGCCTTACCAGTGTGAGTTCTGCGGCGCCACCTTCAGCCAACGCTCTAATCTCCAATCCCACAAACGAGCCACTCATTACGACGACAAACGATACAAGTGTGACGATTGTGGCAAGTGCTTCAAACGACGCAGACTGCTTGATTATCATATCAAAGCAGCGCATACTGGAGAAAGGCCTTTCAAATGCAACGTGTGCGAAGCGACTTTCGTCTATCCAGAACATTTTAAGAAGCACCGACGAATCCATACAGGAGAGAAGCCATTCGTGTGTGAGGTGTGCGGAAAGGCTTTTAATAGTAGGGATAACAGAAACGCACATAGATTTGTGCATTCGGATAAGAAGCCGTACGAGTGTTTGGTTTGCGGGGCTGGGTTTATGAGGAAGCCTTTGCTGTATCAGCACATGCAGACTGCAGGGCATTTAAATGATACTATTGTGGTGAATCAACCACGGTTGACTACAGATGATGATCAGATTATTACGgTTAATGCTGATGGTGAAATGGAACTAGTTGAAGGCGACGTAAGTCGTTTGGAGCCATTTGACGAAGAAAACACTCAAGGAGACTCTAAATTATACATAGCCGAACACATGCTGGTCGATGGTGCCAAGGTGTTGGAACATGGAGATGGAGCACTCATTCTTGGAGACAATGGTGAAGAATCGGAGGCTGTGGAACATATTATTATAGATGGACAgcAAATACAATTTGCTGACGCCGAAGACGACGATGTGAACATGGAAGAACACGAAGAAACAGAACACATCCTAACCGGAGAAGAATACGAGAGCATCATCACACCAGAAGCCCTTGCGGAAGGCCAGACTCAAATAATCCAAACAAAAGATGGCCCCGTGCAGCTAGTCGCCGTCAGGATACCGAATGAGAAGGGCGAAGAGGAAGAGGCTTGGATAAAAATTGTACCTGAATCTGTAGAGTGA
Protein Sequence
MEVVAEVEDNPHCLVCFGRIGVSGRNSVDIFNKETQTCSERPLKDIMSQVLSVELQKDEVHSPVICKKCFKQFNEIDELELRMNELKEDLMNGYQKTLAKVNALTDNDDEEKFSTVGETNKENQMPKKILDIPSSDDESAQTTMPPNKKPKLQTIEEIEMELVKIHGGVEKDEPKTGKEEEEEEDMENSNHQTVYSFKNDSNQGGSSVDEEIENNQDNTDALLEAAAIAERSLGTKIKIEENCEEDNSNVLKKKANNVMAMNKKEGGGSVKKIKEEYSNNVNMVSRDGDLYTCLLCEGDETVCGEAKAITQHIKVVHDARIYICDVCGEDFRKRNDLSVHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKAWACDTCGKKYSSRNLLEEHINTHTGVRPYVCPVCKKDFASKYTFKAHEKTHEVRPRPFQCSQCSKSFLSQQNLLAHERTHLGVKEFQCHLCEKQFGSAHNLEVHSIVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCDDCGKCFKRRRLLDYHIKAAHTGERPFKCNVCEATFVYPEHFKKHRRIHTGEKPFVCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTAGHLNDTIVVNQPRLTTDDDQIITVNADGEMELVEGDVSRLEPFDEENTQGDSKLYIAEHMLVDGAKVLEHGDGALILGDNGEESEAVEHIIIDGQQIQFADAEDDDVNMEEHEETEHILTGEEYESIITPEALAEGQTQIIQTKDGPVQLVAVRIPNEKGEEEEAWIKIVPESVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01096826;
90% Identity
-
80% Identity
-