Pspi037145.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720318.1:13285302-13296074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00014 0.022 16.5 1.1 2 23 150 171 149 171 0.97 2 15 7.4e-06 0.0012 20.5 4.9 1 23 176 198 176 198 0.98 3 15 0.00024 0.038 15.8 1.5 1 23 204 226 204 226 0.96 4 15 0.00056 0.088 14.6 0.5 1 19 232 250 232 253 0.94 5 15 0.0001 0.016 16.9 1.0 1 23 260 282 260 282 0.96 6 15 7.3e-07 0.00012 23.7 4.7 1 23 485 507 485 507 0.98 7 15 3.8e-05 0.006 18.3 5.3 1 23 513 535 513 535 0.98 8 15 1.3e-06 0.0002 22.9 2.3 1 23 541 564 541 564 0.97 9 15 0.004 0.62 11.9 2.9 1 23 576 598 576 598 0.97 10 15 0.00038 0.059 15.1 4.8 1 23 604 626 604 626 0.98 11 15 1.8e-06 0.00029 22.4 0.5 1 23 633 655 633 655 0.96 12 15 1.1e-05 0.0018 19.9 1.3 1 23 661 683 661 683 0.98 13 15 1.2e-06 0.00018 23.0 0.5 3 23 691 711 689 711 0.96 14 15 4.6e-05 0.0073 18.0 0.3 1 23 717 739 717 739 0.99 15 15 0.00087 0.14 14.0 0.3 1 23 744 767 744 767 0.98
Sequence Information
- Coding Sequence
- ATGGAACCCGTCGTCTTGGACTTCGAGCGCATCTGCAGGGTGTGCAAGAACGAGGAGGGCCTAATGCACGACCTTTTCCCCACTGACATATCCACCGACCCCAGCTGTCCCCACTATGACGAGATGCTAATGGCGTGCACCTCACTACAGATTACCCAAGACGACGGCCTTCCCACATTGATATGCGACCACTGCGTGAGCTCCCTGAAGTTATGCTTCGACTTCAAAACCCTGTGCGAGAGGTCCGACGTGGAGCTCCGCCAGGCCGCCGAAAACTTACGCAAGAGTGAAGAAATGGGTTACGACGTTAAGCTGCTCCCTACCCCGGAAAGAACCGAGAGCGAAACCGCAAAACCTGACGAGCTCTCAGAAATTGTGCTGGACACGGAAGTTCCCCTCGACAAGTGCGACTTCATCGAGATTCTCGATAACAACCAGATGATCCTCACTTGCAAGCAGTGCTATAAGGTGTTCAACACGGTCGACGGACTCAAGAGCCACAAACGCATCCACACGGGCTTGTTGTTCAAGTGTAAGCAGTGCGACAAGTCGTACACGCAATTGAATCACTTGCGACGTCACGAATTGACCCATGAtaagaaaaaattgtatatttgtcgGATTTGTAATAAGACGCTGATACGATTCGAACATCTAAAAAGGCATTTGGTGATTCATCTGAAGGATAAGCCGTTCACTTGTGAAAAATGCACGAGGGGTTTCAATAGGGCAGAGCATTTGGTTAATCACGCCGATAAGTGCAAAGGGGAGAAGATGCACATTTGCGATATTTGTAATAAAGGATTTATAAGGAAAGATACTCTGGACGTTCATAGGCAACAACATGGGGCTTCAGATAACAGCAAACTGACTTTGGAAAATTTGGATAATATAGAAGAGCATTATATTGAGATTGAGAATGGTGAACCGGAGGAATTAGTTGAATTCCAAGATGATGCAGATGATAATGGAGATGATGATGATTCTGATTATATTGAGCAAGAAATTCAAAATGAAGAAGGAGGATGTTTTGAACCAGTTGTAAATATATTGGTTACTGATGTGGGATCTAAAGCTGAAGTTGTTACAGAAGAAGAAAACATCAACGTGAAAACATTGCAAATACAGATTCAATCAGAATCGGACGTACAAACAGTGGAGGAACAGGAAGTCAAtacgaaaattgaaattgaaccgTCGTCACCGCCGATACAAAAATTCGAGCATGATTCCGACAGTGCTCATTCTGAGTACACCCCAAATAAAACGTCCCCTAAAGTGAAACGGGGAAGGGGCCGTCCAAGGAAACACCCAATTCGAATGAAAGGTCGTAGAGGACGTCCTGCGAAAGTAAAAATCGAAGTTAAAGAAGAATCTATCGAGGAAGAAGATGAACAACAACAGGATTATGATGAAGaaaGTAACACGATTGGAAACTCTGGAGATCGGATATACGAATGCACCACTTGCAAGAAAACGTTTTCACGCGCTTCTCATTTAAAGAGGCACGAAAGCACCCATTCGGATTTTAGGCAATTCACTTGCAACATGTGCCCGAAGACGTTCCACCGTCGAGATCATCTAATGCAGCACGTGAAATTGCATTCCCAGGTGCAGGAATACGAGTGCGACGTTTGCAAGAAGACTTTCACAAGAGCCGATCATCTAGCGAAGCATAAAATCACAAAGCACGAGAACGGGGAGCACGGTAGAGCGGAGAAGAAGCATAAATGCGAGATATGCCAGAAAGGTTTCACGACAGAAAAATACAGAGATTTACACATGAAACTCCATGCCGgtgataaaatgttcaaatgcaAAACCTGCGATAAGGGATTCTTATCGAAATCACACCTTTCGGAACACATGAAGTTTCACAGTGAGAGCTCGAAAAAGTTTTTGTGTTCAGAATGTGGACAGAGGTTTATTAGGAATGATTATTTAGTGATTCATATGAGAAGGCACCGCGGGGAGAAACCGTTTAAATGCAAATTTTGTGGAAAAgGATTTCCAAGAACAACAGATCTGACGGTACACGAAAGGTATCATACGGGGGAAAAAACGCACCTCTGTGTTATATGTGGACGCGGGTTTGGAAGAGCGTATAATTTAACTGTCCACATGAGAACACACACTGGAGAAAAGCCTTATCAATGTACATACTGTGATTCAGCTTTTGCTCAGGGCAATGACTTGAAAGCTCACGTCCGACGACATACTGGTGAAAGATTTCAGTGTGATTTATGTCCTGAAACGTTCATCATGGGTTATTTGTTAACTCAACATAAAAGATCGGTTCATGGACTCAATGTTGTTAGTAATATTAGGAGATTGCAGCCAGTAGTCAAAGAAAATCCTGATGAACCACCACCGATTACAATAACGTTGCCTCCACCGGTAGTCCCATCAAACTTGATGAGCGCACAAATCCATGCGCAAATACAGCTAGCTCAGATTCAACACCACATCGTGAACGAATAA
- Protein Sequence
- MEPVVLDFERICRVCKNEEGLMHDLFPTDISTDPSCPHYDEMLMACTSLQITQDDGLPTLICDHCVSSLKLCFDFKTLCERSDVELRQAAENLRKSEEMGYDVKLLPTPERTESETAKPDELSEIVLDTEVPLDKCDFIEILDNNQMILTCKQCYKVFNTVDGLKSHKRIHTGLLFKCKQCDKSYTQLNHLRRHELTHDKKKLYICRICNKTLIRFEHLKRHLVIHLKDKPFTCEKCTRGFNRAEHLVNHADKCKGEKMHICDICNKGFIRKDTLDVHRQQHGASDNSKLTLENLDNIEEHYIEIENGEPEELVEFQDDADDNGDDDDSDYIEQEIQNEEGGCFEPVVNILVTDVGSKAEVVTEEENINVKTLQIQIQSESDVQTVEEQEVNTKIEIEPSSPPIQKFEHDSDSAHSEYTPNKTSPKVKRGRGRPRKHPIRMKGRRGRPAKVKIEVKEESIEEEDEQQQDYDEESNTIGNSGDRIYECTTCKKTFSRASHLKRHESTHSDFRQFTCNMCPKTFHRRDHLMQHVKLHSQVQEYECDVCKKTFTRADHLAKHKITKHENGEHGRAEKKHKCEICQKGFTTEKYRDLHMKLHAGDKMFKCKTCDKGFLSKSHLSEHMKFHSESSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDSAFAQGNDLKAHVRRHTGERFQCDLCPETFIMGYLLTQHKRSVHGLNVVSNIRRLQPVVKENPDEPPPITITLPPPVVPSNLMSAQIHAQIQLAQIQHHIVNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -