Pspi011042.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- -
- Assembly
- GCA_963082785.1
- Location
- OY720303.1:30317601-30327498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.46 73 5.4 0.6 10 23 2 16 1 16 0.93 2 35 0.0021 0.33 12.8 0.2 3 23 25 45 23 45 0.96 3 35 0.00022 0.035 15.9 0.0 1 23 51 74 51 74 0.95 4 35 9.8e-06 0.0016 20.1 0.5 1 23 79 101 79 101 0.98 5 35 0.054 8.6 8.3 1.6 2 23 111 132 110 132 0.97 6 35 4.1e-05 0.0065 18.2 1.9 1 23 139 161 139 161 0.97 7 35 3.6e-05 0.0057 18.3 0.1 1 23 167 190 167 190 0.95 8 35 3.9e-06 0.00062 21.4 1.6 1 23 196 218 196 218 0.99 9 35 2.2 3.4e+02 3.3 1.0 1 9 224 232 224 232 0.91 10 35 0.00013 0.021 16.5 0.3 3 23 235 255 234 255 0.97 11 35 5.2e-05 0.0081 17.8 0.7 2 23 261 283 260 283 0.96 12 35 0.00052 0.082 14.7 1.3 3 23 290 310 288 310 0.96 13 35 0.014 2.2 10.2 0.9 1 23 316 339 316 339 0.91 14 35 5.2e-07 8.3e-05 24.1 3.0 1 23 344 366 344 366 0.97 15 35 0.017 2.7 9.9 1.7 1 23 375 398 375 398 0.97 16 35 0.00019 0.031 16.0 0.0 2 23 405 426 404 426 0.96 17 35 2.1e-06 0.00033 22.2 0.3 1 23 432 454 432 454 0.98 18 35 0.0028 0.44 12.4 0.2 1 23 481 503 481 503 0.99 19 35 0.37 58 5.7 0.1 1 13 537 549 537 551 0.85 20 35 0.00026 0.042 15.6 0.1 3 23 552 572 550 572 0.96 21 35 0.00014 0.022 16.5 1.1 3 23 579 600 579 600 0.97 22 35 0.0003 0.047 15.4 1.1 3 23 607 627 605 627 0.96 23 35 0.0015 0.24 13.2 0.5 1 23 633 656 633 656 0.96 24 35 1.4e-07 2.3e-05 25.9 2.2 1 23 661 683 661 683 0.96 25 35 0.055 8.7 8.3 1.7 1 23 692 715 692 715 0.96 26 35 0.00013 0.02 16.6 0.0 3 23 723 743 721 743 0.97 27 35 3.9e-06 0.00062 21.4 0.2 1 23 749 771 749 771 0.98 28 35 1.9 2.9e+02 3.5 0.3 1 8 777 784 777 789 0.90 29 35 7.4e-05 0.012 17.4 1.7 3 23 796 816 795 816 0.97 30 35 0.071 11 8.0 2.6 1 23 821 844 821 844 0.93 31 35 0.0088 1.4 10.8 0.3 2 19 850 867 849 870 0.88 32 35 1.2e-05 0.0019 19.9 0.5 2 23 875 896 874 896 0.96 33 35 0.0003 0.047 15.4 2.6 1 23 902 924 902 924 0.97 34 35 3.3e-07 5.3e-05 24.7 0.9 1 23 930 952 930 952 0.97 35 35 0.00096 0.15 13.9 3.0 1 23 958 980 958 980 0.98
Sequence Information
- Coding Sequence
- ATGTTCTCACTCAAGTACAATCTACAAAGCCACATCAAGAAAACCCACCGTGATCCCAGTGAAATACTAGATTGTCCCCATTGTGGTAAAAAGATCCCTAATAAGGATTCATATGATATTCACGTGCGGGCACATTTCAATGAATTCGATTTTAATTGCGAGGATTGCGGAATTGGGTATTCGACGCGGGTAGCCTTATCCCAACACATCAAAGCCATCCACAAGGGTGTTCGCTACGATTGTGAAGTTTGCGGGAAGAAATACACGCGCATCACACAGCTGAAGGAACACCAAGCCACCCACGATCCTCTCTACAAGGCGCCTGATATAACATGCGAATTATGTGGACTCGTTATGCATTCAAAAAGCTCTTATTACACGCACCTCCGTAAACACAAAGGAACACAAAAGAGATTCTTCTGTGAGCTGTGCTCTAAAGAATTCACCAGCAATAAGAGCCTGAGGGATCATACTAGGATTCACAACAATATAAGGCCGTACAGTTGTGGGATTTGCGGGAAGGCTTTTACGCAGAAGAATGTGCTGTTGAATCATGAAAGGGGTGTGCACACTAAGGAGAGGCCGTTTAAATGTGATGTGTGCGGGAAGGGTTTTACTCAGAAGACGGTTTTGACGACGCACAAGAGGAGTCATACTGGGGAGAGGCCTTACCCTTGCAAGATTTGCGGGAAGAGATGGTTGTGCGTCATTTGCTACAAAGCCTTCGAAACGAAAACCCAACTTCAGAAACACATATACATTCACAAGCCAAAAGATTTGGAATGTCCCCACTGCTCAAAACTGTTTTACCGCAACGCACTCCTGCAAGAACACATAAGAAACGTCCACTCCACCGAAAACGTCATCTGCGAACACTGTGGCAGAAAGCTGAAAACGCGGGAATCGTATATGAAACACGTCCGCGCGCACTTCAACGACTATCCCTATCACTGCGACATATGCGGTGTCGGACTGAGCACCCACAAATCCCTGAAGCTCCACCGCGATGCCATCCACTTCAAAATCAAGCACGAGTGCAGTTTTTGCGGGAAAACCTACTCGCAGAACTCCAACCTGATCCAGCACATGAAGCAGCACAACCCGTTGTATAAGGGTCCTGATTTTAGCTGCAAGGAATGCGATTTTGTGGCGCAATCACAAACTAGTTATTACCGGCATATAAGGCAGAAGCATGGAGTTGAGAGTAACTTAATTTGTGACATTTGCGGGAAGGATATTTCCAGCAAGCGGGGTTTGGTGGAGCATATGAGGATTCATAACAATGTTAAGCCGTATGCTTGTTCGTTATGTGGGAAGGCGTTTGTTACGAATTACGCGCTCAAGTCGCACGAGAGGTCGCACACCAAAGAGAGGCCGTACGCGTGTGATCTGTGCGGTAAAGGGTGGCACGATGAAAAACACAGGATAAAAACGAAGGAATTCCAATGTAAATTATGCGAGGCGACGCTTTCGTCTGAGGAAAAACTAATGGAGCATGTAAGGATTCATATTAAAGAGAAACCTTGCTGCTGCGTCATTTGCGATACGGTTCTCCCTTCACGCAAGTCGTACAGACGGTATAAAATGGTCCACACCAACGTGCGGCGTTTCGCGTGCAATGAATGCGAAAAGGCTTTCGACAGTAGATGGTTGTGCGCTATTTGCTATAAAGCCTTCGAAACGAAAACCCAACTTCAGAATCACCTATACATCCACAAGCCGAAAGATCTGGGATGCCCCCACTGCCCGAAACTGTTCAACCGCAATTCGCTCCTGCAAGAACACGTAAAAAACGTCCACTCCATCGAAAACGTCATCTGCGAACACTGCGGCAGGAAGCTGAAAACGCAGGAATCGTACATGAAACACGTTCGCGCACACTTCAACGACTACCCCTATCACTGCGACATATGCGGCGTCGGACTCAGCACCAGCAAATCCCTGAAGCTGCACCGTGAGTCCGTCCACTTCAAAATCAAACACGACTGCAGTATTTGCGGGAAGACCTACTCGCGGAACTCCAACCTGATCCAGCACATGAAGCAGCATAACCCGTTGTATCAAGGTCCTGATTTTAGCTGCAAGGAATGCGATTTTGTGGCGCAATCACAAACTAGCTATTACCGGCATGTCAGGCAGAAGCACGGGGTTGAAAGCAACATAATTTGTGACATTTGCGGGAAGGAAATTTCTAGCAAGAGAGGTTTGGTGGAGCATATGAGGATTCATAACAATATTAAGCCGTATGCTTGTTCGTTGTGTGGGAAGGCGTTCGTTACGAATTACGCGCTCAGGTTGCACGAGAGGTCGCACACCAAGGAGAGGCCGTATGTATGTGATATATGCGGTAAAGGAGGAAACAAAGAGAAAGAGAAGCCACCTTATTGTGCGATATGCAACAAGACATTCTCAGTAAACACCCGTCTCAAGACGCACATGCAAAAACACGTCGATTTAAAACACAGATGCCAATTTTGCGACGAAAAATTCGCCACATTGGCGCTAAGGAAGAAGCACGAAAAGGATCAACACGAGGGTCAATATATCGAATGCAAAATATGCGGGGAGGGATTTAGAAATAGACGCTCATTAAAGTTCCACGGGAAGAAAGAGACCAATTCTGTTTGCGAGGTTTGCGGTAAGGTGCTTAGAAATCATGATACTTTGAAGAAACATATGGCTGTGCATAGTGAAGAGTGGTCCTACTGCTGTAGTACGTGTGGGAGGTTGTTTAAGACGTCGCAGGGGTTGAGGGTGCATCAGGTTACGCATACGAAGGAGAAGCCGCATGATTGTAAAATATGCGGGAAGGCTTACGGGCGAAAGTCGATGTTGATAGTGCATATGAGGACTCACACTGGAGAAAAGCCTTATGAGTGCCGGCTTTGTCAGAAAAGGTTCACGTCACAAACGGATCGTAATTCTCATGTGAAGCGACATTATGGTGCTAATTTGCGTTTAAATTAG
- Protein Sequence
- MFSLKYNLQSHIKKTHRDPSEILDCPHCGKKIPNKDSYDIHVRAHFNEFDFNCEDCGIGYSTRVALSQHIKAIHKGVRYDCEVCGKKYTRITQLKEHQATHDPLYKAPDITCELCGLVMHSKSSYYTHLRKHKGTQKRFFCELCSKEFTSNKSLRDHTRIHNNIRPYSCGICGKAFTQKNVLLNHERGVHTKERPFKCDVCGKGFTQKTVLTTHKRSHTGERPYPCKICGKRWLCVICYKAFETKTQLQKHIYIHKPKDLECPHCSKLFYRNALLQEHIRNVHSTENVICEHCGRKLKTRESYMKHVRAHFNDYPYHCDICGVGLSTHKSLKLHRDAIHFKIKHECSFCGKTYSQNSNLIQHMKQHNPLYKGPDFSCKECDFVAQSQTSYYRHIRQKHGVESNLICDICGKDISSKRGLVEHMRIHNNVKPYACSLCGKAFVTNYALKSHERSHTKERPYACDLCGKGWHDEKHRIKTKEFQCKLCEATLSSEEKLMEHVRIHIKEKPCCCVICDTVLPSRKSYRRYKMVHTNVRRFACNECEKAFDSRWLCAICYKAFETKTQLQNHLYIHKPKDLGCPHCPKLFNRNSLLQEHVKNVHSIENVICEHCGRKLKTQESYMKHVRAHFNDYPYHCDICGVGLSTSKSLKLHRESVHFKIKHDCSICGKTYSRNSNLIQHMKQHNPLYQGPDFSCKECDFVAQSQTSYYRHVRQKHGVESNIICDICGKEISSKRGLVEHMRIHNNIKPYACSLCGKAFVTNYALRLHERSHTKERPYVCDICGKGGNKEKEKPPYCAICNKTFSVNTRLKTHMQKHVDLKHRCQFCDEKFATLALRKKHEKDQHEGQYIECKICGEGFRNRRSLKFHGKKETNSVCEVCGKVLRNHDTLKKHMAVHSEEWSYCCSTCGRLFKTSQGLRVHQVTHTKEKPHDCKICGKAYGRKSMLIVHMRTHTGEKPYECRLCQKRFTSQTDRNSHVKRHYGANLRLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -