Pcog072242.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000493.1:974914-984279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 2.6 10.9 0.1 1 23 298 321 298 321 0.98 2 12 4.7 9.9e+02 2.8 0.2 2 23 329 351 328 352 0.92 3 12 0.2 42 7.2 0.3 1 23 358 381 358 381 0.94 4 12 0.92 1.9e+02 5.1 0.6 2 10 495 503 494 505 0.95 5 12 0.067 14 8.7 1.7 3 23 561 582 560 582 0.97 6 12 2.5 5.2e+02 3.7 2.4 2 21 619 638 618 639 0.93 7 12 0.15 31 7.5 1.0 1 23 657 678 657 678 0.93 8 12 0.0052 1.1 12.1 2.2 1 23 684 706 684 706 0.97 9 12 0.0012 0.26 14.1 1.2 1 23 712 735 712 735 0.96 10 12 0.51 1.1e+02 5.9 7.8 1 23 741 764 741 764 0.95 11 12 0.00015 0.03 17.0 3.1 1 23 770 792 770 792 0.96 12 12 0.0016 0.32 13.8 0.4 3 23 800 821 798 821 0.96
Sequence Information
- Coding Sequence
- ATGCATATGAAACGGAACAATGATTCTAATGTTGACATCAACGTTAAAGATGATGGACAAGAAAATATCTCTGAAAGAATTTCAGATGATATTGTTGGGATCAAAGATGAAAAAATGATTATCAATCAAGATAGTCTTTCTTGCGATCAATCCAGTGATACGCAAGAACTTTATAAGAAAAATCTAATCAAAACAGGTGAATGTATTTCTAAAGAAAATGCTAGCTATGTCGATAACGATGAAATTATAAAAGATGAGATTGAATGCACTTCTAACGAAATTATAAATAATAGTGAAATGAAAGATGATATTCAAATAGAAGATGAAAAATTGATTTTCAATATGAGCAGTGCTTTATCTGATGATGAATCTGATAGAGCCGAAAAGACAGTTTTTAAAGCAACTCTTATGGGGAAAGGTGAAGATGGAATGGATTTTGTTATAAACATTGAAGAAGATATTAGTGGAAATTGTTTATCTGTTGAAGAAATATTGGATATCAGAGAGCAATTAAATGTCGAACCGATGGAAGAAGTACAGAATAATCCGCCCAAAAAACAAAGAAAACGACTTTCTGCTGTTTTCTTGGACATGATCTGGGATATGAAGGACAATTCAGAAGACAGAATTCAGTGCAACAAATGTAACGTTGTTATGCGGAAAAGTATAATAGATTTCCACCAAAAAACTGACTCGTGCAAAATCAACGCATTTCTGTTATACATAAAAAAAACAAAGAATTTAAAAAACAGAATCCCCTGCAAATTCTGCAACAAGCAGTTTCTGGGAGACCGCATGCTACAACACATAGAGTCAAAAAAGTGCAACAAGTCCTTACTCTCAGTGAAAAATATATTTCAAAATAAGATAAGAACCAAATTAAAAAAGATGTACACTTGTACCTACTGCTCTGTGGAAGTTTCATCCGCCATATTGCTTTACGCGCATTTAAAGAAAGAGCATTGCAATTTTAGTAGGTTATTGCCATGTAATTTATGTAATTTTGCCGCATACAATTTGAGGCCCTTATACGTGCACATGTTCGTAGATCATCACGATGATAGCGGAAGGTATAAGTGCTCCTATTGTGATTTCACTGAGATTACTGCTGCTAAAATGATTGAACACATGAATGAAAAACACCCTGATGCACAAACAAATTCTGATCAGGCAATCGCTACAAAATCTGATATGGAATTGTCCGGTGATCGCAATGAAACTTCTGAAATTGAAAAGAAAACAGCGCACAAAAGTAGTGAAACTCTTCTCTCTGAAATCAACAATGAATCAATATCAAAATCTTCTCAAAGTAATACGAAAAAAACACTCAAATCTGAGGAGACATTCCTGACAGATGAATCGTTACTTGAACATATTGAATCTCCAAACAAACACAAAATAAGTCCTACGAATGTCAGGGCTTTACTCGCTGAAGCCCAGATGATATCATTTGATCACACTGAGCCTTCTCAAAGCGAAGTTAAATGTGATAAGTGTGATAAGAGTTTCTTGACAGCTCGTCCAATGCCTTTTAATAATTGTGAAGCGTGTTTGGAAAGCCTCGATTGCACAAAACGTAATTGGTACTCGTGCACATTTTGCTCAGTGACTGTACCTTACGCTTTAGGACTACATTTCCACGTTAAACAGAATCATCCGGATTTCAAAATGGAATTACTGTGCAAAGATTGCAATTTCCGCTCAAGCAAATTAAGACTCCTATACACGCACATGAATGTCAAGCATGGCAGCAGCGAGGGAAGGCTGAAGTGCCCCCATTGTGATTATGTAGAGTTTTGTAGTACCCTCATGAATAAACATAAACGTGAAAAGCACTCCCATTTGTGGCTTTCGAAATGCGCAAAATGCTTGCACGTCTTTCACGGAAAAGCTACATTCCAAAAACACCTTACCAGATGTGGAAAGCGGGTCGTAATGCAAGAAAAGCCTGAACAAACAGAAGAAATATTCTTGTGCGATATATGCGGGAAAATTATTAAAAAAACGACTTTTAAATCGCACAGGCGAGCGCACGTTACTATAAAGGAATTCAAGTGCAAGCACTGTCCTAGTAAGTTTCGGGCGAGCTATGAACTCGAAGACCACAGTTTAATGCATGACGAAAACGGGAATTATAAATGTATCGAATGCGACGAAGTTTTCAAGACTAAAAGGAGCTTCGAGATGCATATTCACGTTGTTCATAAAAACAGAAAACTGTACTGCTGCAATAAGTGCGATATGAAATATGTCCATAAACATCGGTATGAAACTCATTTGAAGGAAGTGCATACCGATCACTTCAGATTCGATTGCAAAGTTTGTGGGAAGAAGTTTAAGAGATTCATGCATGTTAAACAGCATATGGTCGTGCACACCAAAGAACAACCGTTTGGGTGTGAGCTATGTGAGATGAGGTACACACAAGCTCACGCATTGAGGGCTCATATAAGAGCAAAACATAAAAAAAGTTAA
- Protein Sequence
- MHMKRNNDSNVDINVKDDGQENISERISDDIVGIKDEKMIINQDSLSCDQSSDTQELYKKNLIKTGECISKENASYVDNDEIIKDEIECTSNEIINNSEMKDDIQIEDEKLIFNMSSALSDDESDRAEKTVFKATLMGKGEDGMDFVINIEEDISGNCLSVEEILDIREQLNVEPMEEVQNNPPKKQRKRLSAVFLDMIWDMKDNSEDRIQCNKCNVVMRKSIIDFHQKTDSCKINAFLLYIKKTKNLKNRIPCKFCNKQFLGDRMLQHIESKKCNKSLLSVKNIFQNKIRTKLKKMYTCTYCSVEVSSAILLYAHLKKEHCNFSRLLPCNLCNFAAYNLRPLYVHMFVDHHDDSGRYKCSYCDFTEITAAKMIEHMNEKHPDAQTNSDQAIATKSDMELSGDRNETSEIEKKTAHKSSETLLSEINNESISKSSQSNTKKTLKSEETFLTDESLLEHIESPNKHKISPTNVRALLAEAQMISFDHTEPSQSEVKCDKCDKSFLTARPMPFNNCEACLESLDCTKRNWYSCTFCSVTVPYALGLHFHVKQNHPDFKMELLCKDCNFRSSKLRLLYTHMNVKHGSSEGRLKCPHCDYVEFCSTLMNKHKREKHSHLWLSKCAKCLHVFHGKATFQKHLTRCGKRVVMQEKPEQTEEIFLCDICGKIIKKTTFKSHRRAHVTIKEFKCKHCPSKFRASYELEDHSLMHDENGNYKCIECDEVFKTKRSFEMHIHVVHKNRKLYCCNKCDMKYVHKHRYETHLKEVHTDHFRFDCKVCGKKFKRFMHVKQHMVVHTKEQPFGCELCEMRYTQAHALRAHIRAKHKKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -