Pcog043415.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000223.1:2243253-2255327[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.42 87 6.2 0.0 2 23 286 308 285 308 0.89 2 16 0.00039 0.082 15.7 0.2 1 23 363 386 363 386 0.97 3 16 0.89 1.8e+02 5.1 0.4 1 23 424 446 424 446 0.96 4 16 1.5 3.2e+02 4.4 1.4 1 23 478 502 478 502 0.95 5 16 0.00085 0.18 14.6 4.6 1 23 505 528 505 528 0.96 6 16 0.084 17 8.4 3.4 2 23 535 557 534 557 0.95 7 16 0.0039 0.8 12.6 4.4 1 21 644 664 644 665 0.95 8 16 0.0083 1.7 11.5 1.4 2 23 677 699 676 699 0.91 9 16 3.4 7e+02 3.3 0.7 1 23 702 725 702 725 0.94 10 16 0.016 3.4 10.6 0.4 3 23 732 752 730 752 0.92 11 16 1.4 2.8e+02 4.5 0.4 2 23 786 808 785 808 0.94 12 16 0.1 21 8.1 0.7 2 23 817 839 816 839 0.95 13 16 4.3 8.9e+02 3.0 0.0 3 23 846 867 845 867 0.92 14 16 8.7 1.8e+03 2.0 2.6 3 23 988 1009 987 1009 0.95 15 16 2.2 4.6e+02 3.9 0.3 2 23 1016 1038 1015 1038 0.92 16 16 0.35 74 6.4 0.8 1 23 1051 1073 1051 1073 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATAAACTTTGCAGGATATGCGGGAAGATCACGGACGCCTTCCTACACATTTTCCGGACCGAGGGGCTCACTAATAAAATTGAGACATGTTTACCTATAATTGTATCACCTCATTGTCTATTGCCGGACACGATATGCACCGGCTGTTACGACACGGTCAACAACTTCTACACGTTCATAAAAAACTGCCTCCAGAGCATAATAATCCTGGAGGCGCAGCTCGACATCACCGACTCCTGCTTGAAATCGAAGCGTAGGCACGAGAAAACCACCTGCACCGATTCCCCACCTTCTGCGAACCCCATCGATCAACCTCCCGTTTGTCCGCACGACGATGACAAATTCAACCTACGGGAGACGAAAAAGAAAATCTCGGACTTCGCCTTGCACCTCTCGAAAATCGAAGAGGAGCTATCGCAGAACAAGCTGAACTTCCCGTCTCTGAAGTTGAGCCGGAGGAAAATCGTCAGTTACGATAGCAGTTCCGAGGACGAGCGCGAGCTCCCGACGAATATAAAGTCGAAGTTGTATTTCGACGATAGGGAAAACGATCTGATTAATGAAATAGCGGAGAGGAAGTCGTTGAAGAGGAAGGGCGAGGCGATTATGAGCAGCACGACGAAGATTTTTAAAATCGACGGGAGCCGCAGGAAAAAGCGGCCCCCTGTTAAAGTGCAGTATCAGGCTAAGGTTTTAGAGGAGTCGACGTGGAATTTCAATACGCTCGAACAGATTTACGATGAGATGCAGGAGCGGCAGAAGGAAATCGGAAGTGATGGGGAAAATAATATGCCTGTTAATAATACTCTTAATGTTGTCGAAAAGGAAATAATCAATAGTTTACCGCAAGTCTGTTTATTGTGCGATTCTCAATTCACGGGGCCCTCTCTGTTGGCGGCTCACGTGTACGAGACACACGGAATCGATATGGCGCAGGTTGCTTCGACTGAGCCGGTTCCCGAGAAGAGGAAAAAGATTCCCAATTTGGTGAAGATTACGGATCTGAAGCAGAAACGGGACTCGCAAGAAACGAAAACGATATCAGAAAATGGCGAAGACCCCCCGACACTGGAACCAACTTACGTCTGCCCCTTATGCCCGGCGTCCCTCACGAATAAAACTGACTTGTTCGTGCACTTGCGCCAGAAACACCCCACGAAATCCCACCTGCTGTGCGGCCTGTGCCTCCATATGGCCTCCTCCTATTTAAACCTAACCGACCACATGGAGGCCTGCATAAAAGCCCACCCGATTTCCAACCCGTTCGTTTGCAAAGTGTGCAAATACAGCGACGATAATCAGAAAACGGTCGAAAACCACATAACCGTGCACGATTTTCTCATTAATTTTTGCAAGAAAGAGGGGAAGATTTTCGATCCGGCCGATTACATAGAGATGAATCTGAGTTGCGAGGCGACGAAAACGTACACGTGCAACGAGTGCAGCGGGGCGACGTTCGTTTTCTTCAAAGAGTTTTCGACGCACAGAAGGTCGTTGCATTCCATTTTTCACTGTGATCTTTGTAATAAATTCTACGGGAGGAATTCGCATTTATGGAAGCACGTGAACCGCCTGCACAAAGGCCACCCGTCGATAACGTGCCAGTTCTGCTACAAGACGAGTGCATCGAAATACCACTTGTCTCAGCATTTCAACAAAATCCACACGATTAAATCGCAGAAATTGAAAAACGGCGATTTGGTCGAAGAGGAGGATTTCATGAGCAAGAAGTTCGAGGCGTTCGATTTCCAGAGCGTCCGGCAGAGCTTCATGCGGCAGGAGTTAAACACGTCGAGCGGGAAGAAAGTCGAGGAGGAGAGCAGTCTGAGCTCGAGCGTCGAGGTGCCGAAAGAAATCGATACGAGCAGCAATTTGTACACCAACATAATCACTAATTACACTCCGCCGGCGAACAACGGGGAGTTCAAATGCCCGAAGTGCTCGAAAGGCTTCCACAAGAAAACCTTGCTGAAAAAACACAAAAAAAACTGCAGGCCTCGTTTACAAAAAGATCTGCTAACGCGCTGCAAATCCTGCTCGAGGATTTTCAAAGACCGGCAGAGCCTAGCGAAGCACCTCGTCAATTATCACAGCGAATACGCCTGCGAATTGTGCGAGGAAAAAGTTCAAAGCAAGTGCGAGATCGTTTCGCACATCCGTTTCAGCCACCCCGAGTCCCACTTGTTCTGCCCCGATTGCAAGAATGTGCTGCGCAACCAGGAGGACTTGAAAACGCACACCGACGACCACTCGAACTCCTTCGTCTGCCAATTCTGCGCCGATCTACTCCCGAGCAAAATCAAGCTAAAAATGCACATCTTGAGCTTGCATCGGAAAATCTTGAGCCTCAGCTGCGGGGTTTGTTTGAAGCTGTTCGAGACGCAGCACATACTCAGGGATCACGTCAGGTTGGTGCACAAGGACGTGTTGCAGCCGTTGACTTCTTGCACGGTTTGTGGGAAGAATTACGGTTCGAAGTGGAAGACGTACGATCATATCAATAAGTCGCACGGGAGGATTTTCAGGGCTTGCAAGGCCTGTTTGGAGGTCTTCGACACGGACGCCGATTTGGAGATGCATTACGAGCTGGTACACATCAATATACCTAAAGAGAAGCCCATAAAAAAAGAGGTGTTGATCAAAAAGGAAGTCTACGAAAGCGAACCCGAGCGCGACGACAAAAACTCCTCGTCGGGCGAAGAGAGTGCAGCGGAGGAACCCGAAGAACCAAAACTCTCCCTACTAGAGAAAAGACTGACGAACCCCGAAATAATCGCAAAGCCCATTCTAGCACCAGAAAAAACGAAAGAAAAATCTCCGAAGAAGAAAAGCAAAAAACTGTCCAAGTCCGTTTCAGCAGCAGCGGTAGCGAACGAGCTCGAATACAATCCAGACCAAAACGGAGCCAACAGCTCGAAACGGACTGTTTATGTAAACTCTAACGATCCCTCCTTGTGCGAGATTTGTTTCAAAACGTGGCCCGCGAAGAAGCATTTATGGCAGCATTACATAAGGTGCCACAAGCAGGTCGCTGCGACGGTCTGCGGGATTTGTTTGAAGACCAATAAAAACTACGAGGTGCTCCAGGAGCATCTGCAGACGACGCATCCAACGCTTTTGCATGGAAAAGGTTTCGGCTCGAACTTCATCTGTCGGATTTGCGGGCGATACCACAACGCCAGCTCGAAACTACGACTGCACATGGCCATCCACGAAAACTTCGATTGGAAACTGCTGGAGAAGATGAAGATAAAAACCGAGAACGACGATACTCAAGACGATCTCGAGGATGACATCAACTACGAGAGTTTGATCGAGCAGGTCGAGTGCAGCTCGGAGAACGAAAACGAGAACGAGAACGATTCGAGCAGTTCTTCGGAGAGCGACGAGGAGGAGGAAACGGAGAACTCGAACGAGCACGAGCTGGAGATCAAGCAGGAGGAGAGCGACGAATCAAAGAGCGAGAAAACCTCGGATGAGGATGACGACGAGGAGGATGACGAAGACGACGACGAGTCGATTTCCAACAACTCGGACAACACCAACGAGGCAGCCGTCAAAAACATGAATTTGTACGCGCAACATCCGGATGTCGTCGATTCCGCAGTCAAGTCGATTTGTTACGAAGACGACGGTTGCGATCAGGACTACTCGAATTCCGATTACGAGGAGGTGCAAACGCCCAATTTGAATCCCCACGAGATTCAAAGTGCGGTGGACAGTATTCTGTGA
- Protein Sequence
- MENKLCRICGKITDAFLHIFRTEGLTNKIETCLPIIVSPHCLLPDTICTGCYDTVNNFYTFIKNCLQSIIILEAQLDITDSCLKSKRRHEKTTCTDSPPSANPIDQPPVCPHDDDKFNLRETKKKISDFALHLSKIEEELSQNKLNFPSLKLSRRKIVSYDSSSEDERELPTNIKSKLYFDDRENDLINEIAERKSLKRKGEAIMSSTTKIFKIDGSRRKKRPPVKVQYQAKVLEESTWNFNTLEQIYDEMQERQKEIGSDGENNMPVNNTLNVVEKEIINSLPQVCLLCDSQFTGPSLLAAHVYETHGIDMAQVASTEPVPEKRKKIPNLVKITDLKQKRDSQETKTISENGEDPPTLEPTYVCPLCPASLTNKTDLFVHLRQKHPTKSHLLCGLCLHMASSYLNLTDHMEACIKAHPISNPFVCKVCKYSDDNQKTVENHITVHDFLINFCKKEGKIFDPADYIEMNLSCEATKTYTCNECSGATFVFFKEFSTHRRSLHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQFCYKTSASKYHLSQHFNKIHTIKSQKLKNGDLVEEEDFMSKKFEAFDFQSVRQSFMRQELNTSSGKKVEEESSLSSSVEVPKEIDTSSNLYTNIITNYTPPANNGEFKCPKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYACELCEEKVQSKCEIVSHIRFSHPESHLFCPDCKNVLRNQEDLKTHTDDHSNSFVCQFCADLLPSKIKLKMHILSLHRKILSLSCGVCLKLFETQHILRDHVRLVHKDVLQPLTSCTVCGKNYGSKWKTYDHINKSHGRIFRACKACLEVFDTDADLEMHYELVHINIPKEKPIKKEVLIKKEVYESEPERDDKNSSSGEESAAEEPEEPKLSLLEKRLTNPEIIAKPILAPEKTKEKSPKKKSKKLSKSVSAAAVANELEYNPDQNGANSSKRTVYVNSNDPSLCEICFKTWPAKKHLWQHYIRCHKQVAATVCGICLKTNKNYEVLQEHLQTTHPTLLHGKGFGSNFICRICGRYHNASSKLRLHMAIHENFDWKLLEKMKIKTENDDTQDDLEDDINYESLIEQVECSSENENENENDSSSSSESDEEEETENSNEHELEIKQEESDESKSEKTSDEDDDEEDDEDDDESISNNSDNTNEAAVKNMNLYAQHPDVVDSAVKSICYEDDGCDQDYSNSDYEEVQTPNLNPHEIQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01097013;
- 90% Identity
- -
- 80% Identity
- -