Pcog001611.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000006.1:1829916-1831688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.3 6.9e+02 3.3 0.8 2 23 15 36 15 36 0.94 2 15 0.0098 2 11.3 4.4 3 23 72 93 72 93 0.98 3 15 0.013 2.6 10.9 0.2 2 23 129 151 128 151 0.96 4 15 0.062 13 8.8 2.3 2 23 158 180 157 180 0.96 5 15 0.00049 0.1 15.4 0.1 1 23 186 209 186 209 0.93 6 15 0.00089 0.18 14.6 1.5 1 20 220 239 220 240 0.94 7 15 0.4 83 6.2 2.0 2 23 281 303 280 303 0.88 8 15 0.0066 1.4 11.8 0.2 3 23 310 331 308 331 0.96 9 15 0.31 64 6.6 0.5 2 23 396 418 395 418 0.94 10 15 1.1e-06 0.00022 23.8 1.4 3 23 427 447 425 447 0.96 11 15 0.00022 0.046 16.5 2.3 1 23 453 475 453 475 0.97 12 15 0.00094 0.19 14.5 0.8 1 23 481 504 481 504 0.95 13 15 0.00045 0.094 15.5 0.3 1 23 510 532 510 532 0.94 14 15 0.00047 0.097 15.4 2.7 3 23 540 560 538 560 0.94 15 15 2.6e-05 0.0054 19.4 1.3 1 23 566 588 566 588 0.97
Sequence Information
- Coding Sequence
- ATGCATCATAAGTTGAGTTGCAGCACGAAAACCCATCCTGAAGTTTGCGATTTGTGCGATTACAAGCCGGTTTCATTGAGGGATTACCACGAACATTATAAAACGCACCCGACTCATTACGGAACGGCTTGCGCGTATTGCAACGTGCACATGAGTGGACCTAACGTGTATAAGAAGCATTTGATCGAGATGCACCAAGATAAGAAGTTGGGGTGTGATTATTGCGATGAGGAGTTTTTTCGCACGCACGTTTTAACGAAGCACATGAAGGTCTGTCATCCAAGGGAGGTTTTAAGGTGCAAGTTTTGTGATTTCTCTACGGATGTTGGGTTGTTGTTTGGGGGGCACATGAGGGACGAGCATAATGACATTTTGTGTGAGAAAAAGTGCGAGTGGTGCGATTTTCGCGCGACGGATCAAGCGGATATAACTAGGCACATGGATATGGAGCACGATGATAAAAAAACAGTCAAGTGTAAATTGTGCGATAAAAAGTTCTTCTGGGCGACAACGAGAAAGCGGCACATGCAGAGTTACCACCAGGAGGAGGGGAAATTTGAGTGCGAGGTGTGTGGGAAAATTTTCGGAGTTCAGACTTTTTTGAAGACACACCTGGCTGAAGAACATCCCGATTTTAAAATAAAACAGGAAACAGGGTTTATTTGTGAAATTTGTGGGACGACTTTCACCCAGCATTGCTCTTATAAAGCGCACGTCGAGTTTAAGAGGTGCTCCTCAAAAAACTACCCGGAAGTCTGCCAGTTTTGCGACTACAACCCCGTTTCTCATATAGACTATCACACGCATAAACTAAAAGAGCATTCGCATAAAACAACGCATATTTGTATTTATTGCGATCACGTTTACATAAGCTCGATTGACTATAAAAAGCATTTAACTTTAAATCATCCGGAGAAGAAAATCAACTGCAAGTACTGTGTGTACCCTGTATACACCCCCCGTGCTTACACAAACCATATGCGCAGCAACCACCCAAACGAAAATCTAGAATGTCATTTATGCGATTTCATCACCGACGTAACGAGTATCATGTACTCGCATTATCAAGAAAAGCATTCCGATTATTTCCAAGCGCGCCGGTGTAAATTCTGCGATTACGAAACGAACTGCCCGACCGTCCTGGGAAAACATCTGGAGACGGCCCACGAAGACGAGAAGACTTTAGAGTGCGAAAGTTGCGAGAAGAAGTTCTTCAGTGTGCGCGCGAAGCTGGCGCACATCAAATCGCAACACGAACCCCAGCAAACCGCGATAATCTGCGAACTCTGCGGGAAACATTTCAAAAGGGAATACAACTTGGAACAGCACATGTACACCCACAAAAACGAACGCAAGTTCCATTGCAAAATATGTCCGAAGTCATTCCGCACGACCGCTTCTTTGTACGGGCACACTTTATCGCACTCCGACGAACGCAATCATAAATGCGAGGAATGCGGAATGCTGTTCAAAAAAGCGGCGCACTTAAACGGACACGTGAAGGCCGTACATGAGAAGTACAAACCTTTTTCTTGCAATGTATGTGGTAGAAAATTCGCCAACAGAACTTATATGTTGAATCATGCGGTGATACACACGGGGATTAAAAATTACGGGTGCACGGAATGCGGTAAATACTTCACGAGGAAGTGCCATTTAGTGCAGCATGCAGTGGTGCACACTGGAGAGAGGAAGCATATTTGTGAAGTGTGCGGAAAGGGGTTCACGCAAGCACATGTTTTGAGATCGCATTTAAAGATTCACAGTGTCTGA
- Protein Sequence
- MHHKLSCSTKTHPEVCDLCDYKPVSLRDYHEHYKTHPTHYGTACAYCNVHMSGPNVYKKHLIEMHQDKKLGCDYCDEEFFRTHVLTKHMKVCHPREVLRCKFCDFSTDVGLLFGGHMRDEHNDILCEKKCEWCDFRATDQADITRHMDMEHDDKKTVKCKLCDKKFFWATTRKRHMQSYHQEEGKFECEVCGKIFGVQTFLKTHLAEEHPDFKIKQETGFICEICGTTFTQHCSYKAHVEFKRCSSKNYPEVCQFCDYNPVSHIDYHTHKLKEHSHKTTHICIYCDHVYISSIDYKKHLTLNHPEKKINCKYCVYPVYTPRAYTNHMRSNHPNENLECHLCDFITDVTSIMYSHYQEKHSDYFQARRCKFCDYETNCPTVLGKHLETAHEDEKTLECESCEKKFFSVRAKLAHIKSQHEPQQTAIICELCGKHFKREYNLEQHMYTHKNERKFHCKICPKSFRTTASLYGHTLSHSDERNHKCEECGMLFKKAAHLNGHVKAVHEKYKPFSCNVCGRKFANRTYMLNHAVIHTGIKNYGCTECGKYFTRKCHLVQHAVVHTGERKHICEVCGKGFTQAHVLRSHLKIHSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -