Basic Information

Insect: Philonthus cognatus
Gene Symbol: -
Assembly: GCA_932526485.1
Location: CAKOBG010000349.1:495885-497791[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.4e-05 0.017 17.8 1.2 1 23 255 277 255 277 0.98

2 10 3.5e-06 0.00073 22.1 4.0 2 23 285 306 284 306 0.97

3 10 0.0023 0.49 13.2 4.7 1 23 312 334 312 335 0.95

4 10 0.00021 0.044 16.5 0.3 1 23 349 371 349 371 0.97

5 10 4e-05 0.0083 18.8 2.7 1 23 377 399 377 399 0.99

6 10 0.0011 0.22 14.3 2.3 2 23 406 427 405 427 0.97

7 10 0.00023 0.047 16.4 0.7 1 23 433 455 433 455 0.97

8 10 0.00023 0.047 16.4 1.7 1 23 461 483 461 483 0.97

9 10 4.9e-06 0.001 21.7 1.3 1 23 489 511 489 511 0.98

10 10 0.00018 0.036 16.8 1.7 1 23 517 540 517 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.4e-05	0.017	17.8	1.2	1	23	255	277	255	277	0.98
2	10	3.5e-06	0.00073	22.1	4.0	2	23	285	306	284	306	0.97
3	10	0.0023	0.49	13.2	4.7	1	23	312	334	312	335	0.95
4	10	0.00021	0.044	16.5	0.3	1	23	349	371	349	371	0.97
5	10	4e-05	0.0083	18.8	2.7	1	23	377	399	377	399	0.99
6	10	0.0011	0.22	14.3	2.3	2	23	406	427	405	427	0.97
7	10	0.00023	0.047	16.4	0.7	1	23	433	455	433	455	0.97
8	10	0.00023	0.047	16.4	1.7	1	23	461	483	461	483	0.97
9	10	4.9e-06	0.001	21.7	1.3	1	23	489	511	489	511	0.98
10	10	0.00018	0.036	16.8	1.7	1	23	517	540	517	540	0.97

Sequence Information

Coding Sequence: ATGGAGGAAGTTTGTCGGACTTGTTTGGGGATTATCGACACCGATTCCTCTTTATTTTACGAAATCGAGGAGAGGTCCTTGACCCCAAAATCTAACAGATTGAGGATATTGAGTGTGGTTTCAGAAATGAACCTGGACGTCTCGAAGCACTCGGTAATTTGCAACCAATGCCACGAGACTCTCGGTGTGGTTTATGAATTCCGTATGAAATGCCTACAAACTGAGGAGATTATAAAACAGTACATCGATTCGAAACCGGGAATCAAGGATTTCTGTTTGAAAGATATTTTAGAGGAAACTGAAATGCAGGAAGAGGAGCAGAATGTCATGGAGGTGAAGGAAGAGTTGAGTGAAGATAAAATAAATCGTAGGACGAATTTCGAACAAGTGAATTTGGGCAAAATGCCAAAAGTAGAGGATGAAAGTGATTTAGGTGAAGACATGAAAGAATGTAAAGTGAATGAAATTACTAATGGTAAGTCAGATACTGGTTTAAATACAATCTCAAAAGAAAAAGATTTAAATAACATCTCAAAAGATGGAAAGGAAAGTGATTCAAATAAAACCTCTAAATATGAGAAAGAAGGTGATTTGACAACAACCGCCACACGTAAGAATAAAAGTTATTTAAATGAAAGCTCTAAAGATGATTTAAATGCAATCTCACAAGATGAGGGAGAAGGCGACTTAAATAAAATTGAAAAAGTGGAAATAGAAAGTTATGATGAAGATACTGAAAAAAATTTTCTTACAAAAGCTTTATACTCGTGCAATGTCTGTCAAGCAGAATTTTTCGACAAATCGAAGTTGAATAAGCATTTAAAAGAACACACTCAAGCTTTAGAAATGTTGGAATGCAATATTTGCAATAAATCCTTCAGTAGGAAATGTTATTTAAATTATCATATGAGTACTCATACTGGAGATAGTCGGTACAATTGTATGCTGTGCGATAAAAAATACACACGCCGAGACATTCTTCGGAAACACTTGAAAAAACACCACGATTTAGACATAGATGACGTCGAAATTAGCAACCCGAAATTCACGTGCAGCATTTGCCAGAAAGAATACTCGCAAGAAATTTTCCTGCAGCAGCACATGGCTGCGCATTCGGAAGACCGCCCCTACAAATGCGACATCTGCAAAGAGACTTACAAGACCTCGAACACCCTGATGTTGCACAAGAGAAAGCACATGGTCTCGCGTAACATCGAGTGCGAGTTTTGCAAACGAAAATTCCACTCCGTGGGGTATTTAAAGGAGCATCTCCGCACTCACACAGGGGAGAAAATCTTCGAGTGCAATTTATGCGATCAGAAGTTCGCCCTCCGGCCTTCTTTGCGCAAGCACATCTTCTCGCATTCCGACGATAAGACTTTCAAGTGTGACGTGTGCAACCGGAAATTTCGTCTGCAGCAGGAGTTGATGACGCACAAGAGCGTGCACATCACGGGGAAGAGTTTTAAGTGTACGATTTGCAGCAAGGTGTTTGGGACAAAGAACAATTTAAACTCCCACGCGACCACGCATAATTTGGTGAGGCCCTTTCCGTGCTTCAAGTGTCCCAAGGGGTTTAATCGGAGGTTGGGTTTGAAGCACCATATTATGAGTATGCATAAGGATGTCGATATTAGGAAGGTTATTATTGAGAAATATAGTTCGTCGGTTATTGTGGATGAAGATTTGATTGCGGAAGAAAATGAATGA
Protein Sequence: MEEVCRTCLGIIDTDSSLFYEIEERSLTPKSNRLRILSVVSEMNLDVSKHSVICNQCHETLGVVYEFRMKCLQTEEIIKQYIDSKPGIKDFCLKDILEETEMQEEEQNVMEVKEELSEDKINRRTNFEQVNLGKMPKVEDESDLGEDMKECKVNEITNGKSDTGLNTISKEKDLNNISKDGKESDSNKTSKYEKEGDLTTTATRKNKSYLNESSKDDLNAISQDEGEGDLNKIEKVEIESYDEDTEKNFLTKALYSCNVCQAEFFDKSKLNKHLKEHTQALEMLECNICNKSFSRKCYLNYHMSTHTGDSRYNCMLCDKKYTRRDILRKHLKKHHDLDIDDVEISNPKFTCSICQKEYSQEIFLQQHMAAHSEDRPYKCDICKETYKTSNTLMLHKRKHMVSRNIECEFCKRKFHSVGYLKEHLRTHTGEKIFECNLCDQKFALRPSLRKHIFSHSDDKTFKCDVCNRKFRLQQELMTHKSVHITGKSFKCTICSKVFGTKNNLNSHATTHNLVRPFPCFKCPKGFNRRLGLKHHIMSMHKDVDIRKVIIEKYSSSVIVDEDLIAEENE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -