Pcog081022.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000708.1:273637-278161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 2.8e+02 4.6 0.3 2 23 86 108 85 108 0.90 2 15 0.00092 0.19 14.5 1.7 1 23 114 136 114 136 0.97 3 15 0.0093 1.9 11.4 1.4 1 23 142 165 142 165 0.90 4 15 0.0054 1.1 12.1 0.4 1 23 173 196 173 196 0.92 5 15 0.02 4.2 10.3 0.2 1 23 204 227 204 227 0.95 6 15 0.97 2e+02 5.0 0.3 1 20 237 256 237 258 0.91 7 15 7.4e-05 0.015 18.0 0.1 2 23 982 1004 982 1004 0.96 8 15 0.0011 0.22 14.3 1.4 1 23 1010 1032 1010 1032 0.97 9 15 0.0033 0.69 12.8 2.7 1 23 1038 1060 1038 1060 0.96 10 15 2.9e-05 0.006 19.2 1.4 1 20 1066 1085 1066 1086 0.96 11 15 9.5e-05 0.02 17.6 1.4 1 23 1097 1119 1097 1119 0.99 12 15 0.00068 0.14 14.9 2.8 1 23 1125 1147 1125 1147 0.97 13 15 0.00087 0.18 14.6 4.5 1 23 1153 1176 1153 1176 0.96 14 15 0.00069 0.14 14.9 1.1 1 23 1190 1212 1190 1212 0.97 15 15 1.4e-05 0.0028 20.3 1.9 1 23 1218 1241 1218 1241 0.98
Sequence Information
- Coding Sequence
- ATGAGTGATACCAAAAGCCTTATTTGTTTTATCTGCTTGAGCGATGAAAATGTGATCAATGATACAGAAATTGATTTAGAAAATATCGAGTGGAGGACGAAATTGAAATTCTGTTTACCAGAACTGGACTGGACAATCTCATGCACGTTGTGCAAAAGATGCACGCACCAGCTCGACACAATCACCTCCTTCCGGAACAAATGCCTCTGGTCTTACCTCCAAAAACGCGACATAAACAACGACGACATCCTAATCAAGTGCAAACTGTGCCTAAACGATTTCTCAATACGCTCCGATCTAACCGAACACAACCTCAACGTGCACAACTTGGAAGACCCTTACGACTGCTCGTTATGCTCCTACAGTTTTCACAACCAAGAAAACTTGATCGAACACGAAAACAGACATTATTTACTACAGAGATTTTATTGCGACGAGTGTAAAACGAGTTATACGAATAGTGAACAATTTTCAGAGCATGCTCTTTTTAATCATGGAAAAGTTGAAGAGTGGGGTTTCAAGTGTTCGGAGTGCGGGTTAAATTTTCCGAATGGGATTTATTTACGAAAACATTCGCTTAACATGCATAAAAATAAAGTGGTAATCGAGTTTACGTGTTATAATTGCGGGCTGAAGTTTTTGGATAAGGAGCTTTTAATCGAGCATATCAAGGATGCTCACGAAAGTCACATAATCGTCAAAACGGAGTTTATGTGTGTAGCGTGCAGTTCGGTTTTTAACACGAAGAAAAAATTGGAGGTGCATAAAAGTTCTTGTCTGGAAAATCTTCAAATGAAACAAATAAACAGTACTGAAATTAATGAAAATAAACAAAAACAAATGATAAACAATATCAATCAACAAAAACAAGTGATAAATAATATAAATCAACAAAAACAAATAATAAATAATATAAATCAACAAAAACAACTTCCCAACAACAAATTGTGTTTAGAAAATTACATTAAAAATGACAGTTCGTGTGTGGAAAACGAGGTTTACATAACGAAAACAACGGGTAATTTATACATGACATACAATCTACAAGAACAAAGTGAGTTTAGAAATACAACAGGAGGCTCGATTCTACGACAAAATGAGGTTAGAAAAGCAAATGTCGGCTCATATTCAACGCACAATCTTCAAAAACTAAGCGAGGTTAGAAATAAATCAAATCTAAGCCAGGATCTTCAGAAACCAAGTGAGTTTAGAAACACACCGAGTACCTTCTTTTTAAACCATGATTATATTAACGAGCAGAATAAAGTTAGAAATACGAATGACTCCTCACACGTAACCTACAATCATCAAGAACAAAGTAAGGTTACAAACACCAATTCAAACCACTATCTCGAAAAACAGAACACAAATTATACCTCATACTCCGGCCTCAATCTACAAGAAAATAATGAGGTTAGAAATACTAATTCAAACCACTATCTCGAAAAACAAAGCACAAATCGTACCTTATACTCGGGCCTCGATCTTCAAGAAAATAATCAAGTTAGAAATACCAATTCAAACCACTATCTTGAAAAACAAAACACAAATCGTACCTCATACTTGGGCCTCGATGTTCAAGAAAACAGTGAGCTTAGAACTGGAAATAATGGCCCATTTTCAACCCAGAATATTCACCAACAAAGAGAGGTTAGAATAGTGACTGATAGTTCGTACGTAAACAATCAATTTCGACAACACAGTGAGGTTATAAAATCAAATAACGGCCCGTATTCAAACCTTGATGCTCAACAACAAAGTGTGGTAGGAAACACAAATTTAAATCTCGTCTTTCCACAAGAAATTGATGTTGGACATATAAACGACGGCTCGTATTCAACCATCGATATTCAACAACTAAGTGAGATTAGGAAAACAAAAGGTGGTTCATTTAAAAACCACGATAATCAACAAGAAAGTGAGGTTAGAAATACAAATTCATGCCCAAATACTCAACAACGAAATGAGGTTAGAAATAGAAATGACGGCTCCTATTCAAACTTGAATATTCAACAACAAAATGACGTTGGAAATAGAAATGACGGCTCCTATTCAAGCTTGAATATTCAACAACAAAACGAGGTTAGAAATATAAATAACGACTCCTATTCAAACTTGAATATTCAAGAACTAAAGAAGGTTAGAAATACTAATAACGGCTCGTATTCAAACTTGAGTATTCAACAACAAAAGGAGGTTAGAAATATAAATAACAGCTCCTATTCAAACTTGAATATTCAACAACAAAATACTGATGACAGGACGTGTTCAAACTTAAATACTCAACAACAAATTGAAGTTTTAAATACTAATAACAGCCTATATTCAAACTCGAATATTCAACAACAAAGTGAGGTTATAAATACTAATGACAGCCCATATTCAAACTCGAATATTCAACAACAAAGTGAGGTTATAAATACCAATGACAGCCCATATTCAAACTCGAATACTCAACAGCAAAATGAGGTTATAAATACTAATGACAGCCCATATTCAAACTCGAATACTCAACAACAAAGTGAGGTTATAAACACTAATGACAGCCCATATTCTAACTCGAATATTCAGCAACAAAATGAGGTTATAAATACAAATATTGGTTCACATCTAAACCTCAAAATTCAACAACAAAGCGATATTCAAATTATAAACGACGGCTCGTATTCAACCCTCGATATTCAACAAAAAATTGAGATTGAAAATATAGATAACCCTTCTTCGTGTTTGATCCCTGATATTCAAGAAATATGTGAGGTTACAATCACGAATGACAGCTCGTGTTCAGGTGATGATTTTCATGTAGAGAGCGAGGTTAGAAATGCGTGTTCGAGTCCTGATTTTCAGAAAGTTACTGGGAGTAGAGTTAAACGCCCGCGGAAAGCCAAGGAAAAACAGAGTGTTAAAAAAATTAAAGTGAAAGAAAAGAAGCTGGTGAAAAACGAGTGTGAAATTTGCGGGGTGACTTTCTCCGCGAAGTATTTGTTAACGAGGCATGTGAGGAATGTGCACGCGACAGAAAAAGTTCACAAGTGCGACGAGTGCGAGCAGAAATTCGCCTCTTCCGTTTATTTAGCCGCGCACAAAAAGTACCACTCGGGGAACCGCCCGCATATTTGCTCGTTTTGCGGGAAAGGTTATATTACGACGAGCGATTTGTACCATCACGAGAAAATCCACGCGAACAAACGGGCGTACAAGTGCGACAAATGCCCGAAGGCCTTTAATACTTCGAGCGATTTGCACAAGCACAAGATTTGCGTGCATCTGGATCGTTCTTTGTGGAAATACGTTTGCTCGTATTGCAATCGGCGGTTTCCTCTGAAGACTAATTTGGACACTCACGTGAAAACGCACACGGGCGAGCGGAATTACGCTTGCCATTTGTGCGATCGCAAGTGCATCAACCAGTCGGTGTTGCAGAGGCACATCGATTCGCACTCGAACGTCTGCTCGTTCCGGTGCTCGCACTGCGGGCAGGATTACAAGCACAAGAAGTCTTTGAATTTGCACTTGGCGAAGGTGCACGGGATCGGGGATTTAAAAGTGCCGGAACCGGTGAGAAAGTTCTTCTGCCCGTTTTGTCCTCGGGCGTATTTCGCGAATAACAAACTGCAAAAACATATTCGGACTCACACTGGCGAAAGGCCCTTTTCGTGTAAAATTTGCGCAAAGACTTTCATCGATAAATCGTATGTTAAGCAACATATGAAGACTACGCATAATATTACCGATTGA
- Protein Sequence
- MSDTKSLICFICLSDENVINDTEIDLENIEWRTKLKFCLPELDWTISCTLCKRCTHQLDTITSFRNKCLWSYLQKRDINNDDILIKCKLCLNDFSIRSDLTEHNLNVHNLEDPYDCSLCSYSFHNQENLIEHENRHYLLQRFYCDECKTSYTNSEQFSEHALFNHGKVEEWGFKCSECGLNFPNGIYLRKHSLNMHKNKVVIEFTCYNCGLKFLDKELLIEHIKDAHESHIIVKTEFMCVACSSVFNTKKKLEVHKSSCLENLQMKQINSTEINENKQKQMINNINQQKQVINNINQQKQIINNINQQKQLPNNKLCLENYIKNDSSCVENEVYITKTTGNLYMTYNLQEQSEFRNTTGGSILRQNEVRKANVGSYSTHNLQKLSEVRNKSNLSQDLQKPSEFRNTPSTFFLNHDYINEQNKVRNTNDSSHVTYNHQEQSKVTNTNSNHYLEKQNTNYTSYSGLNLQENNEVRNTNSNHYLEKQSTNRTLYSGLDLQENNQVRNTNSNHYLEKQNTNRTSYLGLDVQENSELRTGNNGPFSTQNIHQQREVRIVTDSSYVNNQFRQHSEVIKSNNGPYSNLDAQQQSVVGNTNLNLVFPQEIDVGHINDGSYSTIDIQQLSEIRKTKGGSFKNHDNQQESEVRNTNSCPNTQQRNEVRNRNDGSYSNLNIQQQNDVGNRNDGSYSSLNIQQQNEVRNINNDSYSNLNIQELKKVRNTNNGSYSNLSIQQQKEVRNINNSSYSNLNIQQQNTDDRTCSNLNTQQQIEVLNTNNSLYSNSNIQQQSEVINTNDSPYSNSNIQQQSEVINTNDSPYSNSNTQQQNEVINTNDSPYSNSNTQQQSEVINTNDSPYSNSNIQQQNEVINTNIGSHLNLKIQQQSDIQIINDGSYSTLDIQQKIEIENIDNPSSCLIPDIQEICEVTITNDSSCSGDDFHVESEVRNACSSPDFQKVTGSRVKRPRKAKEKQSVKKIKVKEKKLVKNECEICGVTFSAKYLLTRHVRNVHATEKVHKCDECEQKFASSVYLAAHKKYHSGNRPHICSFCGKGYITTSDLYHHEKIHANKRAYKCDKCPKAFNTSSDLHKHKICVHLDRSLWKYVCSYCNRRFPLKTNLDTHVKTHTGERNYACHLCDRKCINQSVLQRHIDSHSNVCSFRCSHCGQDYKHKKSLNLHLAKVHGIGDLKVPEPVRKFFCPFCPRAYFANNKLQKHIRTHTGERPFSCKICAKTFIDKSYVKQHMKTTHNITD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -