Pcog064137.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000387.1:1431032-1432423[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6e-06 0.0013 21.4 0.5 1 23 155 177 155 177 0.97 2 11 0.0097 2 11.3 0.2 1 23 183 205 183 205 0.95 3 11 2.6e-06 0.00054 22.5 0.5 1 23 211 233 211 233 0.98 4 11 1.7e-07 3.5e-05 26.3 2.4 1 23 239 261 239 261 0.96 5 11 6e-06 0.0012 21.4 2.6 1 23 267 289 267 289 0.99 6 11 3.4e-06 0.00071 22.2 2.3 1 23 302 324 302 324 0.98 7 11 1.6e-06 0.00034 23.2 7.5 3 23 331 351 331 351 0.99 8 11 0.00028 0.059 16.1 0.6 2 20 357 375 356 378 0.92 9 11 2.9e-06 0.0006 22.4 5.3 1 23 382 404 382 404 0.98 10 11 3.1e-06 0.00064 22.3 0.6 1 23 410 432 410 432 0.98 11 11 2.9e-05 0.0059 19.3 1.1 2 23 439 460 439 460 0.97
Sequence Information
- Coding Sequence
- ATGATCAGCATAGATGAGGTTTCAATCAAACAGGAATTCCTTGATAACGATGGTAAATCAAATTGTAACTTATGGAATGAATCATGGATTAACTGTGAAGTTACAGAAAAAAATACAAATCTAACAAATCTTTCAATCAAAGAGGAAATCATTAAAAAAGATAATGAATCACTTAGTGAGTTATCAAATGAATCATTGATTAAATGTGAAGCAACAGAAATCTACATCCCTAAACTCGAACAACAAAGCACAGAACCACAGGAGAAGGATTTAGTCTACTTGGGTGTTAAAGAATTTAAATGCAAAGAAGAAATTATTGATAGCGATAATGAATCACTTAGTGAGTTATCAAATGAATCATGGATTAAATGTGAAACAACAGAAATCTACATCCCTAAACTCGAACCACAAAGCACAGAACCACCGGAGAAGCATTTAAATGTCCACTTGGGTGTTAAAGAATTTAAATGCAATATGTGCGTAAAGTCGTTTGCCAGGCAGGCCTTGTTAAACCAACACTTGCTGCTGCATTTGAAAAGTAAGCCGTTTAAGTGTGATTTGTGTGAGAAGAGTTATGATCTCGGTGAGGATTTAAAACAACATGTAGACTTACATAAAAAGGAGAAGCCGTTTGAGTGTGAGGTTTGCGGGAAAAAGTTGGCGTCCCGAACTACTCTCATTAGGCATATGCGGTATCACGCGGAGAAAACACCTTATTTATGCGAGGTGTGTGATCAGAGTTTTACACAGAAATCGCATTTAACGGTGCACATGAGGTATCATAAAGGTGAGAAGCCGTTCACTTGTGATATTTGTAAAAAAACTTTTTACACAAATCAGAGATTACAATCACATATTCAGACTCATACCAAAGAAAAACCAAGATGTACAAAAGGACAACCCCACACTTGTAACAATTGCGGGAAAATATTTTTTTCTTCCAGTGGTCTTTTGAGGCATCAAAAAATACATTCTGATGATGGTGTCGGGTGTACTATTTGTAATAAAAAGTTTACCCATAAACATAACTTGACGCGACATATGAGGGTGCATACGAAGGAAAAACTGTCTTGTGATATTTGCACAAGATCATTTTCATCTAAACTGCAATTACAAAGCCACATTTGGCGACATTCGCAGCGTTACTATTGTCATTTTTGTGATAAAAAGTTTTCCACAAAGCAGAAATTAGAAAGGCATGTTCGGGTTCATACAAAGGAGAAACCCTACGATTGTGACATTTGTGAGAAAAAGTTTTCTGTTGCCGAAAGTCTTACGAGACATAAAAGAAGTCATTTGGATGAGCCTGAGGCTAAATGTGAAGTTTGTAATAAAGAGTTTATGTATAAATATAGTTTGAAAAAACATATATTGTTGCATATGAAGAAATAG
- Protein Sequence
- MISIDEVSIKQEFLDNDGKSNCNLWNESWINCEVTEKNTNLTNLSIKEEIIKKDNESLSELSNESLIKCEATEIYIPKLEQQSTEPQEKDLVYLGVKEFKCKEEIIDSDNESLSELSNESWIKCETTEIYIPKLEPQSTEPPEKHLNVHLGVKEFKCNMCVKSFARQALLNQHLLLHLKSKPFKCDLCEKSYDLGEDLKQHVDLHKKEKPFECEVCGKKLASRTTLIRHMRYHAEKTPYLCEVCDQSFTQKSHLTVHMRYHKGEKPFTCDICKKTFYTNQRLQSHIQTHTKEKPRCTKGQPHTCNNCGKIFFSSSGLLRHQKIHSDDGVGCTICNKKFTHKHNLTRHMRVHTKEKLSCDICTRSFSSKLQLQSHIWRHSQRYYCHFCDKKFSTKQKLERHVRVHTKEKPYDCDICEKKFSVAESLTRHKRSHLDEPEAKCEVCNKEFMYKYSLKKHILLHMKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -