Pcog067028.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000414.1:15411-28038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.003 0.62 12.9 0.7 2 23 310 332 309 332 0.96 2 21 2.1 4.5e+02 3.9 0.4 1 20 467 486 467 488 0.92 3 21 2 4.2e+02 4.0 3.4 1 23 517 540 517 540 0.97 4 21 0.68 1.4e+02 5.5 0.0 6 20 552 566 551 568 0.94 5 21 3.3 6.8e+02 3.3 5.5 1 19 574 592 574 597 0.96 6 21 0.0006 0.13 15.1 4.8 1 23 684 707 684 707 0.97 7 21 0.0014 0.28 14.0 1.7 3 23 720 740 719 740 0.97 8 21 5e-05 0.01 18.5 0.1 2 23 748 770 747 770 0.97 9 21 9.8e-05 0.02 17.6 0.5 1 23 780 802 780 802 0.98 10 21 6.7e-05 0.014 18.1 2.1 1 23 804 826 804 826 0.98 11 21 0.002 0.41 13.5 0.5 3 23 850 870 848 870 0.96 12 21 0.00037 0.078 15.7 1.2 1 23 898 921 898 921 0.96 13 21 3.5 7.3e+02 3.2 0.1 3 23 936 956 935 956 0.96 14 21 1.9e-05 0.004 19.8 5.0 1 23 978 1000 978 1000 0.98 15 21 0.00016 0.032 16.9 0.3 2 23 1083 1105 1082 1105 0.96 16 21 4.5e-05 0.0094 18.6 0.8 1 23 1126 1148 1126 1148 0.95 17 21 0.011 2.2 11.2 0.1 1 23 1172 1195 1172 1195 0.95 18 21 0.0012 0.26 14.1 0.9 2 23 1207 1228 1206 1228 0.98 19 21 7.2e-06 0.0015 21.1 1.3 2 23 1239 1261 1238 1261 0.96 20 21 3.9e-06 0.00082 22.0 0.5 1 23 1270 1292 1270 1292 0.98 21 21 0.0059 1.2 12.0 0.2 1 23 1321 1344 1321 1344 0.98
Sequence Information
- Coding Sequence
- ATGGTGATTCTAGATACGGAAATCATCCTAGACACATTAAATCAACTAGAAGACGACCATCGTGGGAATTACATCGATCCAGCGGACTACAAAGAGGTAATTCAAATAAAAGAAGAACCTATCGACGTGGACGCTGATTACATCGATCCTATTCTACCAATGGATGAACCACAAGAAGAGGACCTGTTAATAAAACCAGAACCAGTGGAAATGAGCGACTCCGTCGAGGATTATCCCGAGTTGCCACCCGCCTTATCTCCAAACCCGCCCGCCTTAACCCGTGAAGTTATTGAAGAGGACACGAATAGTCAAGAAGAGGGACAAATAAATTCAGACTTACCAGGGGATGTTTTCGAAAACAATTCTGAAATAAATCCGGAAAATAGAAAATTTATGCCTCCGGTGATTTCTTTACAAAAAAATGGTGGTGCAACCGAGATATTACCCAAGCTTACCTCTATACGTCAGATTGTTTCGAAAGAAAATTCAAAAATTTCTATGAAAGAATATTTAGATGCGACTACGAATAAAAATTCCGAAACTCCTAAAATTACTTTAAGGCAATACTCAGAAATGCCGAAGATTTCCCCAGAAAACGAGACTGCGAGTATCCTAGAAAAAATCACGAGACTGCCAAGGATATCCATACGAAAAAATTCAGACGAATCCGAGCTTAAGATTAATCCGGCAGCGCTTCGAATTTCCATACAGAATAATTCAGAACCATCCGAACTTAAGCATAATCTGGCAACGCCTCGAACTTCTCTAGAAAGTAATCCTGACAGAATCATACCTAAGATTACTTTACAAAGCAGCTTAGAAATACAATCGACGATTAATTTTGAATCGTCCGAGAAAAAATCTTTCAATAATTTATGTAAAATGAATGGAAACGTCGAGGATTCAGTGGGGTGGAAGAACCCTCTGTCGTGTTCGGTTTGCGGTAAAATCCTGAGCAACCGCAGTAACAAGAAGATGCACGAAAAGACGATACACGGGCTTTACAGTGGTGAGGGTGGCAAACGTAAACACGAAAGTTTGAACGATTTTCAATTCAAAGAAATAATCGAAGCCGAAGACGAGTCGGAAAACAGCCAGGAGAGCCAAAAAACTCAATCGAGCAGCGCCCAAGCATCGAGCATATCCGAAATCGAGCAGGAGAAAATCACCTTCGCCGCCGGGCTGCGGCTCCAATCGAAATCCGCCACGCCGACACCGACGTCCACGCAGAACAACACGAAGCTCGATTTAACGAAAATCGAGTGGAACTACTTGGAGAGGAACCGGGTGATTTTTACGATGTTCAAACGCTCGACGTGCTGTTGCCACAACCAGAACTACGGGAATTGGAAGAAGTTGATGACACACTTGCGATCGTTATACGTTTGGTTCATCCCGTATACGTGTTATCATTGTTTGGTGGTGTTTCCGGGCCGTTCAGGGAAGATGCGGCATTACATCCGCTGCCCCAAAAAGGAGTATGAATACTTAGGGAAACTAGCGGAGACAAACTCGAGGAGTTTGGAGAAGGCGCGATTGTACCAGAATTTCAAATGCACCCAGTGCAACATGCTCTATTATTTCTTCGAGGATTTCTGCGAGCACATCGACACCGAGCATATAGGCTTAGCCAGCCCGCCCCACAAATGCGCCTGCGATAAAATCTTCGATAACCGGGAGGAGTTCCAGCAGCACGTTTACAGATCGTGCTACGTCAAGTATTACTGCGAAGTTTGCTTCTCGACGTTCGAGAACCACGACGAGTTCAAGAAGCACTGCGAGGACACGCACGATAAGGACGTGAACTTCGAGTTCTTCCCGATGCATCCGGGTTTTTCGATCCTCGATCCTTCGATGGTCCAGCAGAAGCTGGTTAACGGGAAGGAGCCAGCGCAGGCGAAGCCGGATCCTTCCCAGAAAATCAGGGAGATACCAGAACCTTCGTCCATTAAAGAACCGTATTCCATTAGGGAGAGGCCCGTTTTAAAGCGGGCGTTAACTCAGGCAGACGACATCAAGGTGATTAACCCGTTGGCACTTTCCTCCGGTTTTAACTGCAAAGTCTGCCAACAAGTGTGCGCGAGTTATCACAACTTGATGAAACACATGCGGATTTTCCACAAATCCGAAGTTCCGGAGGATGCCGAGCGCGGCATCTGCGATGTCTGTGGGGTCAAATTCAGCAGTTTTCACAACATGCTGCGGCACCGGAAGGTCCACAACGAGGATATGAAGCAGCTGAAGTGCCCTGACTGTCCCGAAAAGTTCCGATTAAACGGCGAGCTAAAAGAGCACTTAAACACGATACACTCAGAGGGGAGGCCGGTTCGCCTAATCCACAGATGCGCAGAGTGTGGGGAATCGTTCAAAAACATCCCGCTTTTAGAGGCGCATAAAAAAACGCACTTACACACATGCGAGGAGTGCGGGAAGGAGTTCGACACTAACAAAGAGTACGAGCAGCATCGCAACTCGCACCTAACGCTCACGCTCAAGCGGGATCCTCACACTTTAAACTACAGCAGTTTGAGCCCCGGGAATAAAATGTGCCAGCTCTGCGATCGCCAGTTTGAGAAAGACGAGGAACTCCAAGCGCACATGAAGCTGCACGAGACGATGCCGAAGCTAGAGGCCGAGGACGAGGGAATTCCGATCACTCCCGACGATGATATAAGCAAAAAACCTCGAAATTACAACTGCGATGACTGCAGTAAAATTTACACGAACTCGAAAAGCTTATGGGCGCATAATAAGAGATTCCACCCGGGCAGGATTACAAACAGCAATAAAGACTTCCCGAAAGCCTGCGGTGAGTGCGGCAGGATCATCGGAACCCACCCGGCTTGGTTGATGCACCAGCAGATGCACAAGCGCAACTCGTTGAAGGTCCAGAAACATAGCTCGGATAACAGCACGGAGGATTCCGATTACCACACCTGCAAGCGCTGCTTTAAAGTCTTCGCGAACCGCTCCAACTTGAAGATGCACATGAAATCGCATGGGGTTAATCTAAGTCCGAACAGAGCGTTGGCGAAGACCAAACAGCAAAAAACCTACTGGTGCGATTCGTGCCACACGGCCTGCCACGGCTTGGCGGATTTCAACAAGCACAAGCTCGAGTGCAACGTAAGCGAAGCCGATTCTGAATCGAAGAATACGAACGAAGACGCTGAGGCGAAGCAGGAGCAAGGTAAAAGCTTCGCGTTCTCGCTCAACCCGCAGGAGGAGTTGAACAGAAAACCGGTTTATTGCAAGTACTGCAAAATCCCGTTCACCTCCCCGATTAGTTTAAGCCAGCACATGCAGCGGGAGCACGATGAGAAACCCAAGCCCGCTTTGGTGAAAACCCTAAAACCCCAGTTGATCGAGAACAAATACTCCTGCACGATTTGCAAAAAGAGCTTCGCCACAGCCGGCGCTTTGTGCACCCACCAAGGCTGGCACAAGCGCTCGAAAAACAGCAAACTGCAGATTAAACAAGAGTTTAAGAACGGGGAAGCTTTGGTGGACGAGTACAAGTGTAAAACCTGCGGGGGGATTTTCGAAGACGACACGACTTTACAGCTGCACATCCTGGAAATCCACCGCAAAATCAACACCTCGATCCTCTCCGTGCAGAAGTGCAAGCAGTGCCCGCAGGAGTTCAAAACGCGGGCCGAGCTCGATCTGCATGAAAAAACTCACCAGCTGACGATCGACAACAAAATCGGCGTTTCCTGCAAGTACTGCAACAAAATCTTCAGCCGGAGCGATTACCTTAACTTGCATATCAACAAGAAGCACCCGGAGTACACGACGGCGGGGCTCTTTAAGTGCACGCAGTGCGGCAGGGTTTTCGACAAGCAGAGTGCGCTCTCGATTCACTTGAAGGTGCACGAGAGACTCAACACGAACTCTTCTTCGACTGCGGCCAGGAACGGTCCGTCGAGCGTTCAGCCGAATCAGAATCGGGTTTACAAGTATTCCTGCTCGATCTGTCACGCCGGGTACGATATTCCCAAAGATTTAAGGAATCACATCATCACTTCGCATCCATTTTAA
- Protein Sequence
- MVILDTEIILDTLNQLEDDHRGNYIDPADYKEVIQIKEEPIDVDADYIDPILPMDEPQEEDLLIKPEPVEMSDSVEDYPELPPALSPNPPALTREVIEEDTNSQEEGQINSDLPGDVFENNSEINPENRKFMPPVISLQKNGGATEILPKLTSIRQIVSKENSKISMKEYLDATTNKNSETPKITLRQYSEMPKISPENETASILEKITRLPRISIRKNSDESELKINPAALRISIQNNSEPSELKHNLATPRTSLESNPDRIIPKITLQSSLEIQSTINFESSEKKSFNNLCKMNGNVEDSVGWKNPLSCSVCGKILSNRSNKKMHEKTIHGLYSGEGGKRKHESLNDFQFKEIIEAEDESENSQESQKTQSSSAQASSISEIEQEKITFAAGLRLQSKSATPTPTSTQNNTKLDLTKIEWNYLERNRVIFTMFKRSTCCCHNQNYGNWKKLMTHLRSLYVWFIPYTCYHCLVVFPGRSGKMRHYIRCPKKEYEYLGKLAETNSRSLEKARLYQNFKCTQCNMLYYFFEDFCEHIDTEHIGLASPPHKCACDKIFDNREEFQQHVYRSCYVKYYCEVCFSTFENHDEFKKHCEDTHDKDVNFEFFPMHPGFSILDPSMVQQKLVNGKEPAQAKPDPSQKIREIPEPSSIKEPYSIRERPVLKRALTQADDIKVINPLALSSGFNCKVCQQVCASYHNLMKHMRIFHKSEVPEDAERGICDVCGVKFSSFHNMLRHRKVHNEDMKQLKCPDCPEKFRLNGELKEHLNTIHSEGRPVRLIHRCAECGESFKNIPLLEAHKKTHLHTCEECGKEFDTNKEYEQHRNSHLTLTLKRDPHTLNYSSLSPGNKMCQLCDRQFEKDEELQAHMKLHETMPKLEAEDEGIPITPDDDISKKPRNYNCDDCSKIYTNSKSLWAHNKRFHPGRITNSNKDFPKACGECGRIIGTHPAWLMHQQMHKRNSLKVQKHSSDNSTEDSDYHTCKRCFKVFANRSNLKMHMKSHGVNLSPNRALAKTKQQKTYWCDSCHTACHGLADFNKHKLECNVSEADSESKNTNEDAEAKQEQGKSFAFSLNPQEELNRKPVYCKYCKIPFTSPISLSQHMQREHDEKPKPALVKTLKPQLIENKYSCTICKKSFATAGALCTHQGWHKRSKNSKLQIKQEFKNGEALVDEYKCKTCGGIFEDDTTLQLHILEIHRKINTSILSVQKCKQCPQEFKTRAELDLHEKTHQLTIDNKIGVSCKYCNKIFSRSDYLNLHINKKHPEYTTAGLFKCTQCGRVFDKQSALSIHLKVHERLNTNSSSTAARNGPSSVQPNQNRVYKYSCSICHAGYDIPKDLRNHIITSHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -