Basic Information

Insect: Philonthus cognatus
Gene Symbol: -
Assembly: GCA_932526485.1
Location: CAKOBG010000412.1:1613084-1617415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00076 0.16 14.8 0.0 1 23 122 145 122 145 0.96

2 14 0.0022 0.46 13.3 0.1 2 23 154 175 153 175 0.96

3 14 0.0033 0.69 12.8 1.4 3 23 183 203 181 203 0.98

4 14 3.8e-05 0.0079 18.9 0.4 1 23 209 231 209 231 0.99

5 14 1.4e-07 2.9e-05 26.6 0.4 1 23 235 257 235 257 0.97

6 14 0.0054 1.1 12.1 5.1 1 23 263 285 263 285 0.98

7 14 4.2e-06 0.00087 21.9 0.7 1 23 291 313 291 313 0.98

8 14 7.6e-06 0.0016 21.1 0.2 1 23 319 341 319 341 0.96

9 14 9.4e-07 0.00019 23.9 1.6 3 23 349 369 347 369 0.96

10 14 1.8e-07 3.8e-05 26.2 0.2 2 23 375 396 374 396 0.97

11 14 6.9e-06 0.0014 21.2 1.6 1 23 402 424 402 424 0.96

12 14 0.00043 0.089 15.6 0.4 1 23 430 452 430 452 0.97

13 14 6.7e-09 1.4e-06 30.7 0.9 1 23 458 480 458 480 0.99

14 14 1.2 2.5e+02 4.7 0.1 1 19 484 502 484 505 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00076	0.16	14.8	0.0	1	23	122	145	122	145	0.96
2	14	0.0022	0.46	13.3	0.1	2	23	154	175	153	175	0.96
3	14	0.0033	0.69	12.8	1.4	3	23	183	203	181	203	0.98
4	14	3.8e-05	0.0079	18.9	0.4	1	23	209	231	209	231	0.99
5	14	1.4e-07	2.9e-05	26.6	0.4	1	23	235	257	235	257	0.97
6	14	0.0054	1.1	12.1	5.1	1	23	263	285	263	285	0.98
7	14	4.2e-06	0.00087	21.9	0.7	1	23	291	313	291	313	0.98
8	14	7.6e-06	0.0016	21.1	0.2	1	23	319	341	319	341	0.96
9	14	9.4e-07	0.00019	23.9	1.6	3	23	349	369	347	369	0.96
10	14	1.8e-07	3.8e-05	26.2	0.2	2	23	375	396	374	396	0.97
11	14	6.9e-06	0.0014	21.2	1.6	1	23	402	424	402	424	0.96
12	14	0.00043	0.089	15.6	0.4	1	23	430	452	430	452	0.97
13	14	6.7e-09	1.4e-06	30.7	0.9	1	23	458	480	458	480	0.99
14	14	1.2	2.5e+02	4.7	0.1	1	19	484	502	484	505	0.93

Sequence Information

Coding Sequence: ATGAACGAGTATTCGGTTCTGCTGGATTTCGATAAAATCTGTCGGTTGTGCACGGGGGCGCTGGACGCCAACTGCGGCCCCATTTTCGGACCCACGGATGAAGCGGATGTTTCCATGGCTGCTAAGGTTATGACTCTCACCTCTATTCAGGTTGTTTATGGGGACGACCTTCCGCAAGGTGTTTGCCACACGTGCACGGAACTCCTGGAATGTGCTTACAATTTTAAAATCCGCTGCGAGCAATCCGATTTAACTTTAAAGAAATGCCTTCGAGACAACTCGAAAATCGCAAAGGACAATCAATACACATCCGAGGATTTCCACGCCGATAACAGCGAGTTCCCGGAAAACTTGCTGCAATCGTTCGCGTGCTCGGTTTGCGCGAAAGAATTCGTCGATAACAAGGAATTGGTCGATCATATAATTAAAgaacacgcgaaaaccgatgagagcagcctggtttgtaatatttgtaataaggtttatttgaagccgaggaatttggtggcgcatctgggcacgcacaccggcgtcaagccgttcggctgcgaggtttgcgggaagcgtttcacccagggaagggcttacgcctgtcacatgcggacgcacgagaaggaggagagttacaagtgcgaggtctgctcgaagggcttcgcggagaaggcccagttgagcagtcacgtgaagaagcacggggagtcgcacgtttgcagcgtctgcgggaagagctattcgaacgcggggaatttgagggcgcacttgcggctccacagcggggagaccccgtactcttgccacatctgcgacaggaagttcgcacagagcaacgctcactcctATCACATGAAAACGCACTTGGgagataaaccgttttcctgtgaaatctgttcgaaagccttcacgacaaacgggcagttggataatcacaggaggctgcacaccggggagaggccgttcgcctgcaccgcctgcccgaagaggttcacgcagaagggggccctcaccgtgcacatgatgaaccacgttgggaacaagccgcacttgtgcaacatttgcgggaaaaagtattcgcagaatagtttgctcgtcgatcatatgagatcacatacagGTGAGACGTTGCagtgcagagtgtgcggtaagggctattccaactcgggcaacttatcggcccacatgcgaacccactcgggtgtcaagccgcacgcgtgctcgctctgcgacaagtccttctacgtggcgaacaaactggcgaagcacatgcggacgcacaccggcgagcgtccctacgcctgcaccgcgtgccccaagcgcttcaagagctcggacgtgatgaaagtccacctgcggctccacacgggcgagcggccctacaagtgcccggactgcgacaagggcttcacgaacaactcgcagttgaaagcgcattcgaggacgcacgccgagactttcgagtgcggctcgtgttttcagagattccccggccacggggatttgctcgtgcataacatggagtgccagagtgccgacaagcAGGTTCATTATTAA
Protein Sequence: MNEYSVLLDFDKICRLCTGALDANCGPIFGPTDEADVSMAAKVMTLTSIQVVYGDDLPQGVCHTCTELLECAYNFKIRCEQSDLTLKKCLRDNSKIAKDNQYTSEDFHADNSEFPENLLQSFACSVCAKEFVDNKELVDHIIKEHAKTDESSLVCNICNKVYLKPRNLVAHLGTHTGVKPFGCEVCGKRFTQGRAYACHMRTHEKEESYKCEVCSKGFAEKAQLSSHVKKHGESHVCSVCGKSYSNAGNLRAHLRLHSGETPYSCHICDRKFAQSNAHSYHMKTHLGDKPFSCEICSKAFTTNGQLDNHRRLHTGERPFACTACPKRFTQKGALTVHMMNHVGNKPHLCNICGKKYSQNSLLVDHMRSHTGETLQCRVCGKGYSNSGNLSAHMRTHSGVKPHACSLCDKSFYVANKLAKHMRTHTGERPYACTACPKRFKSSDVMKVHLRLHTGERPYKCPDCDKGFTNNSQLKAHSRTHAETFECGSCFQRFPGHGDLLVHNMECQSADKQVHY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -