Pcog070682.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- gtf3a
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000461.1:801267-826599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 5.6 1.2e+03 2.6 0.0 9 21 35 47 33 48 0.86 2 38 0.24 50 6.9 3.7 1 16 52 67 52 69 0.88 3 38 0.00046 0.095 15.5 2.6 2 23 127 148 126 148 0.96 4 38 2.2e-06 0.00046 22.7 0.6 2 23 154 176 153 176 0.96 5 38 0.019 3.9 10.4 2.4 2 23 184 205 183 205 0.96 6 38 2.3e-05 0.0048 19.6 0.1 1 23 211 234 211 234 0.97 7 38 3.2e-06 0.00067 22.3 1.1 1 23 239 261 239 261 0.98 8 38 0.019 4 10.4 1.5 2 23 271 292 270 292 0.97 9 38 0.00011 0.022 17.5 0.7 1 23 299 321 299 321 0.98 10 38 3.4e-06 0.00072 22.2 0.2 1 23 327 349 327 349 0.98 11 38 1.4e-05 0.003 20.2 5.0 1 23 355 377 355 377 0.99 12 38 1.1 2.3e+02 4.8 0.6 1 11 383 393 383 393 0.91 13 38 5.7e-07 0.00012 24.6 0.5 1 23 392 414 392 414 0.98 14 38 0.019 4 10.4 2.4 2 23 420 442 419 442 0.96 15 38 0.0012 0.26 14.1 1.9 2 23 448 469 447 469 0.97 16 38 0.11 23 8.0 0.7 1 23 475 498 475 498 0.93 17 38 2.6e-07 5.4e-05 25.7 2.4 1 23 503 525 503 525 0.98 18 38 0.071 15 8.6 2.0 1 23 534 557 534 557 0.97 19 38 0.00065 0.13 15.0 0.0 2 23 564 585 563 585 0.96 20 38 7.4e-05 0.015 18.0 0.8 1 23 591 613 591 613 0.98 21 38 3.9e-06 0.00082 22.0 0.2 1 23 628 650 628 650 0.98 22 38 0.00028 0.057 16.2 1.3 2 23 656 678 656 678 0.96 23 38 0.073 15 8.5 1.8 2 23 684 705 683 705 0.96 24 38 0.0025 0.52 13.2 1.8 1 23 711 734 711 734 0.90 25 38 2.5e-06 0.00053 22.6 2.3 1 23 739 761 739 761 0.98 26 38 0.013 2.7 10.9 1.1 3 23 772 793 770 793 0.96 27 38 0.0034 0.71 12.7 0.0 2 23 800 821 799 821 0.96 28 38 0.00011 0.022 17.5 1.0 2 23 828 849 827 849 0.94 29 38 5.1e-05 0.011 18.5 0.2 2 23 855 877 854 877 0.95 30 38 0.001 0.21 14.4 1.3 2 23 883 904 882 904 0.96 31 38 0.014 3 10.8 1.1 1 23 910 933 910 933 0.91 32 38 1.2e-06 0.00025 23.6 0.9 1 23 938 960 938 960 0.97 33 38 1.1 2.3e+02 4.8 0.9 2 23 970 992 969 992 0.94 34 38 0.014 2.9 10.8 0.0 2 23 1073 1095 1072 1095 0.92 35 38 0.0037 0.76 12.6 3.0 1 23 1100 1122 1100 1122 0.98 36 38 1.2 2.5e+02 4.7 4.8 1 22 1128 1149 1128 1149 0.95 37 38 3.5e-05 0.0073 19.0 4.3 1 23 1156 1178 1156 1178 0.99 38 38 0.82 1.7e+02 5.2 0.1 2 11 1216 1225 1215 1231 0.84
Sequence Information
- Coding Sequence
- ATGTCTTTTAATGTTGATTTATTATCTTTTAGAATCACCTGCAAAGACGTATTTCCTAAAAATGATCCCTTAATGATCGACGAGAAAATCCACAAACCGGAGCAGTTCTCCCAAGAAAGTCTCCTGAAAAATCACTTGGAAACCTGCACGCAATATTGTTGTAACGTGTGCGGTAAAACATACAAGAGCAAGCGAGGTTTCTTTGAGAACAAACTTGACCCGAAAACGCCACGTTTGATGATTTTCGACGATGTTTGGAGTCAGCAGAGCCACTTGTCTTGTTCATGCACAAGCTACACCCTAAAAGAACTGCAAACACAAAATGTTATTTGCATAAATAGATGTTATCTCGTTCGTCTTGCAAAAAGAAGTGATCTCTGCTGTAAAATATGCGAAAAACAGTTTGAAAACAAGAACAAACTGTGGAAACACGCGCGGGTTCACAAGGAGAAAAACTTGAAGTGTCCGCACTGCCCGAAAATGTTCTCCCTTAGCTACAACCTCGCAGCCCACATCAAAAAAGGCCATCGCGACCCCATCGATATAATCCACTGTCAATACTGCGATAAGAAAATCAGGAACCACGATTCGTACGAAGTccacgtcagggcgcactttaaccaattcgattaccgctgcgaggactgcggaacggaatattccacgaaagacgctttggttcagcacgttaattcagtccacaagggtattcgatacgattgcgagacctgtgggaagagattcacgcgggtggtccagctgagggagcaccagaaaacgcacgatcccttatacaaagcgcctgatataaaatgcgaggtctgcgattacatcgcgcactcaaagagctcttactacctgcatatgcggaagcacgcggggactcaaaagcggttcatctgcgagctgtgcgcgaaggagtttactagcaataagagcttgaaggaccacacgaggattcataataatgaaaggccgtacagttgcggaatctgcggaaaggcttttacgcagaagagcgtgctgttgaatcacgagagggtacatacgaaagagaggccgtttaagtgtgacgtctgcggaaagtgtttcacgcagaagaccgtgctgaagacgcacaagaggagccacaccggggagaggccttacgcgtgcaaggtttgcggaaagagATATACCTGCCCCGTATGCGAAAAAACCTTCGAAACAAAAACCCAACTCCAAAAACACGTCAATATTCACAAGCCCAAAGAGCTGGAATGCCCGCATTGCTCAAAACTACATGCGCGCAAGTCACTTTTAAAAGAGCACATCAAAACCGTACACCCCGGCGAAGTCCTTACCTGTGCACACTGCGGCAGGAGATTGAAAACAGAAGAATCCTACTTAAAACACGTGCGCACGCACTTGAACGATTTCCCCCACCATTGTGAGTTATGCGGATTGGGTTTGGGCACGCTGAAAACGCTCAAGCAGCACATGGAGGGGGTTCATTTCAAAATCAAGCACCAGTGCAACGAATGCGGGAAGGATTACACGCAGAGCTCGAGTTTGATCCGACACATGAAGTCTCACAATCCTGCGAATGGGGGGGCTGAGTACAGTTGTAAAGAATGCGAGTTTGTCGGACAATCGAGGTCGAGCTATTACAGGCATTTAAGGCAGAagcacggggtggagagtaatttgaattgtgatatttgcgggaaggagattgccagtaagacaggtttggtcgaacatatgaggatccacaccggagagaagccgttttcttgttcgctctgcgggaaggatttctcggcgtattccgcgcttaagacgcacgagaggaggcacaagaacggaaaagcttttgagtgcaagttctgctcaaagagATATAACTGTCCCATATGTGAAAAACCGTTTGGAACTAAAACTCAACTCCAGAAACACGTCAATATCCACAAACCGAAAGAGCGGGAATGCCCTCACTGCTTAAAACAATACTCAAGCAAAGCACTTTTAAAAATACACATGAAAAACGACCACTCTGGCGAAATTCTCACCTGCGAACACTGCGGAAGGAGGCTGAAAACAAAACCAATTTACTTAAAACACTTGCTCACGCACTTGAATGATTACCCCCACCACTGCGAGACATGCGGAATGGGTTTTAGCACGGCGAAAACGCTGAGGCAGCACAAGGAGGCGATTCACCTCAAAATCAAGCACACGTGCAACGATTGCGGGAATGTTTACTCGCAGAAATCGAATATGATTCGACACATGAAGTCGCACAAACCCACGTACAAGAAGCCCGATTTCGGTTGTAAAGAATGCGAGTATGTCGCGAAATCGAAATCAAGCTATTACAggcatttaaggcagaaacacggggtggagaaagatttgaattgtgatatttgcgggaaggagattgccagtaagcgaggtttaattgaacacatgacgatccacaccggagagacgccATGCATCTGTCTCATATGTGGAAAAACCTTTGGAACCAAAATCCAACTTCAAAAACACGTCTACGTCCACAGGCCGAAACAGCTGGAATGCCCCCAGTGCCCAAAACTATTCTCACGCAACTCTCTTTTAAAAGAGCACGTAAAGAACGTCCACTCTACCGAAATCCTCACCTGTGAACATTGCGGAAGGATGCTGAAAACTAGAGACTCTTACTTAAACCACGTGCGCGCGCACTTCAACGATTACCCCCACCACTGCGAAATCTGCGGGATGGGTTTGAGCACGCTGAAATCGCTAAAGCAACATAGGGAAGCGATCCACTTCAACATTAAACACGAGTGCGCTTTGTGCGGGAAAATATACTCGCAGAACTCGAATTTGATCCAACACATGAAGTCCCACAATCCTTTATACAGAGGGCCCGATTTAAATTGCAAAGAATGCGAATTTGTAGCGCAATCGCAGACGAGCTATTACAGGCATGTGAGGCAGAAGCACGGAGTTGAGAGATTGTATCCAGCATCAGGCTGGATTAAATCCTGCCCGATGCCAGCGATTGTAATGGAACATTGGCACGACGCGACTGGATTGATGCCCGGGTTGAAGCCAAGCGCGATCGTGTGTGTCCACCCTATGATGTTCTTATTTTTATTAAAATGTTATTGTGTAAAAAATTTACAAAGATCTACAGCCGAAAATCTAGATGTTTTTAATTATATGATGAGGGGAAAAACTGTCCCCTGTCCGCAGTGCGACAAGAAATTCATCCAGCTCAATGTGGTCAAAGCGCACATCGAGCAGGTCCACCGCGAGCCTAAGTACCAGTGTAAAACTTGCGGCAAGAGAATTTCCCATAAATTGACGTACGAGCGACACGTCAAGGCCCACGAGAACAAATTCGACTTTTGCTGTGAAGTCTGCTGCAAGGAATTCAGCTCATACACGGGGTTGAAGCAGCACAGACAGACCGTGTACGATGGGATTTTCTACAAGTGCAACCACTGCGAGAAGGTTTTTAGTCAGAAAAGTCCTTACTTGCAACACTTAAAAAAACACGATCCTCTTTACAAGGAGGAGATGATCAAGTGCGATCAGCGTCATTACGTAGCGTGTGCCTATGATCTTACCTTCTACAAATCGAAGAAGCATCGGAATACACAGACTTCCGTTTGTGATATATGCGGAAAGGTTTACAAAgccgctagatattacacatga
- Protein Sequence
- MSFNVDLLSFRITCKDVFPKNDPLMIDEKIHKPEQFSQESLLKNHLETCTQYCCNVCGKTYKSKRGFFENKLDPKTPRLMIFDDVWSQQSHLSCSCTSYTLKELQTQNVICINRCYLVRLAKRSDLCCKICEKQFENKNKLWKHARVHKEKNLKCPHCPKMFSLSYNLAAHIKKGHRDPIDIIHCQYCDKKIRNHDSYEVHVRAHFNQFDYRCEDCGTEYSTKDALVQHVNSVHKGIRYDCETCGKRFTRVVQLREHQKTHDPLYKAPDIKCEVCDYIAHSKSSYYLHMRKHAGTQKRFICELCAKEFTSNKSLKDHTRIHNNERPYSCGICGKAFTQKSVLLNHERVHTKERPFKCDVCGKCFTQKTVLKTHKRSHTGERPYACKVCGKRYTCPVCEKTFETKTQLQKHVNIHKPKELECPHCSKLHARKSLLKEHIKTVHPGEVLTCAHCGRRLKTEESYLKHVRTHLNDFPHHCELCGLGLGTLKTLKQHMEGVHFKIKHQCNECGKDYTQSSSLIRHMKSHNPANGGAEYSCKECEFVGQSRSSYYRHLRQKHGVESNLNCDICGKEIASKTGLVEHMRIHTGEKPFSCSLCGKDFSAYSALKTHERRHKNGKAFECKFCSKRYNCPICEKPFGTKTQLQKHVNIHKPKERECPHCLKQYSSKALLKIHMKNDHSGEILTCEHCGRRLKTKPIYLKHLLTHLNDYPHHCETCGMGFSTAKTLRQHKEAIHLKIKHTCNDCGNVYSQKSNMIRHMKSHKPTYKKPDFGCKECEYVAKSKSSYYRHLRQKHGVEKDLNCDICGKEIASKRGLIEHMTIHTGETPCICLICGKTFGTKIQLQKHVYVHRPKQLECPQCPKLFSRNSLLKEHVKNVHSTEILTCEHCGRMLKTRDSYLNHVRAHFNDYPHHCEICGMGLSTLKSLKQHREAIHFNIKHECALCGKIYSQNSNLIQHMKSHNPLYRGPDLNCKECEFVAQSQTSYYRHVRQKHGVERLYPASGWIKSCPMPAIVMEHWHDATGLMPGLKPSAIVCVHPMMFLFLLKCYCVKNLQRSTAENLDVFNYMMRGKTVPCPQCDKKFIQLNVVKAHIEQVHREPKYQCKTCGKRISHKLTYERHVKAHENKFDFCCEVCCKEFSSYTGLKQHRQTVYDGIFYKCNHCEKVFSQKSPYLQHLKKHDPLYKEEMIKCDQRHYVACAYDLTFYKSKKHRNTQTSVCDICGKVYKAARYYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -