Pcog072285.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000494.1:488848-490625[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-08 2.4e-05 26.3 0.0 2 43 19 60 18 62 0.88
Sequence Information
- Coding Sequence
- ATGCCAAGAAATTACCAAAGGCAATTGGGTTCAAGAAAATATGCCGACTACACGAAAGAAGCATTAGAGGAGTGTTTAAATGAAATTAGAAGTGGAAAAATATCGCATAGAAAAGCCGAACAAAAATATAAGATCCCAAGACGTACTATTATGAATAAATTAAAAGGCAGACACAGTAGGAAACCAGGAAAGCAACCCATATTTACCTGTGATGAAGAAAACCAGTTTGCTAATTGCATAATTTCTTTGGGTGAATACGGGTTTCCTGTAAACGAACGAGAACTGAGACATATAATAAAAAACTATTTGAGCCGATGTGGAAGGACAGTAAAAATATTTGACAATAACTCACCTGGTAACGACTGGATAAAATCCTTTATTGCCAGACACCCTGAACTCTCACGTCGTTTTGCTGAAAATGTTAAACGAACACGAGCGGCAGTTAACGAACCTATGCTAAGAACATTTATTCAAAATTTGTCCAAAGAGCTAATTAATGTTCCTGCTACAAACATCTGGAACTTTGATGAGACGAATCTTACCGACGATCCGGGGAAAAAGAAAGTTCTCGTCAAAAAAGGATCCAAATATCCGGAAATGATCAGAAATGCCTCAAAAACATCTATATCTGTCATGTTTGCTGGTAACGCGGCTGGAGAATTCCTCCCACCCAGTTCTGGATGGTTCGACGCAGCAATTTTCACAGATTGGCTTGAAAAACAAATGCTACCACGATTGAGAAAATTAGAAGGGAAAAAAGTATTACTATGTGACAGTCTCTCTTCTCATTTAACTATGCATGCGGTGGAATTATGCCGCCAATATGAAATATCTTTAATCTGCTTGCCTGCCAACAGCACGCATCTGACACAGACTCTTGATGTGGCATTCTTCCGGCCACTAAAAATAGCGTGGCGAAAAGTTTTAAGTGACTGGAAAGATACAGAAGATAGCATCCGTAATACAAACATACAGAAGCAGAACTTCCCACAACTGCTGTCGAAAATGATGGATATTATTGCTCCTCGCGTACCAGACAACTTAAAAGCTGGCTTTCGGAAATGTGGCATAGTGCCTTTAAATGTGGAAGAACTTTTATACCGCTTGCCAAGATCGTCCTGCAATGAAGACGACATTCAATCTGTGTTCCTGCAGAGCTTGGAAGCTAAAAGATCAGATTCTACAAAAATCCGGAACTGGAGAAAAAAAATTAACATTCCAGCAGGAAAAAGCGTTTGTGCTGAAAATACATTGAGCGATGAAGACGTGGTTAACGAAGAAGTCGTAGCAAATGAAAATATGTTAGAGGATGAACCTGCAATTTCCTCTAGACATGAAGACGACCCCTATTTCAAGGACAACTCAGATGATGATTTTGATTTGCATGACCTAGTTGACGAGCAACAAAAAGAAATAGAGTTTATGGATTACGTGGAAGGCAAGCCAACTAAGAACAAAGCTTTTCAGTTTGCAAACGTTGTTCGAGAAATAGGACGTTTCGAGAATTTTCCTGAGCTGAACAACAACTTGTTTTAA
- Protein Sequence
- MPRNYQRQLGSRKYADYTKEALEECLNEIRSGKISHRKAEQKYKIPRRTIMNKLKGRHSRKPGKQPIFTCDEENQFANCIISLGEYGFPVNERELRHIIKNYLSRCGRTVKIFDNNSPGNDWIKSFIARHPELSRRFAENVKRTRAAVNEPMLRTFIQNLSKELINVPATNIWNFDETNLTDDPGKKKVLVKKGSKYPEMIRNASKTSISVMFAGNAAGEFLPPSSGWFDAAIFTDWLEKQMLPRLRKLEGKKVLLCDSLSSHLTMHAVELCRQYEISLICLPANSTHLTQTLDVAFFRPLKIAWRKVLSDWKDTEDSIRNTNIQKQNFPQLLSKMMDIIAPRVPDNLKAGFRKCGIVPLNVEELLYRLPRSSCNEDDIQSVFLQSLEAKRSDSTKIRNWRKKINIPAGKSVCAENTLSDEDVVNEEVVANENMLEDEPAISSRHEDDPYFKDNSDDDFDLHDLVDEQQKEIEFMDYVEGKPTKNKAFQFANVVREIGRFENFPELNNNLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01184456;
- 90% Identity
- iTF_01184445; iTF_01126305; iTF_01126297; iTF_01126298; iTF_01126299; iTF_01126300; iTF_01126301; iTF_01126302; iTF_01126303; iTF_01126304;
- 80% Identity
- iTF_01184445;