Pcog069651.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000450.1:266938-267669[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-08 2.4e-05 26.2 0.0 2 43 19 60 18 62 0.88 2 2 3.3 3.4e+03 0.1 0.0 27 41 166 180 165 182 0.89
Sequence Information
- Coding Sequence
- ATGCCAAGAAATTACCAAAGGCAATTGGGCTCAAGAAAATATGCCGACTACACGAAAGAAGCATTAGGGGAGTGTTTAAATGAAATTAGAAGTGGAAAAATATCGCATAGAAAAGCCGAACAAAAATATAAGATCCCAAGACGTACTATTCTGAATAAATTAAAAGGCAGACACAGTAGGAAACCAGAAAAGCAACCCATATTTACCTGTGATGAAGAAAACCAGTTTGCTAATTGCATAATTTCTTTGGGTGAATACGGGTTTTCTGTAAACGAACGAGAACTGAGACATATAATAAAAAACTATTTGAGCCGATGTGGAAGGACAGTAAAAATATTTGACAATAACTCACCTGGTAACGACTGGATAAAATCCTTTATAGCCAGATACCCTGAACTCTCACGTCGTTTTGCTGAAAATGTTAAACGAACACGAGCGGCAGTTAACGAACCTATGTTAAGAACATTTATTCAAAATTTGTCCAAAGAGCTAATTGATGTTCCTGCTACAAACATTTGGAACTTTTATGAGACGAATCTTACCGACGATCCGGGGAAAAAGAAAGTTCTCGTCAAAAAAGGATCCAAATATCCGGAAATGATCAGAAATGCCTCAAAAACATCTATATCTGTCATGTTTGCTGGTAACGCGGCTGGAGAACTCCTCCCACCGTATGTTGTTTATCGAGCGACCAAAATGTGGACCACATGGACTGAAAACGGGCCCAAATGA
- Protein Sequence
- MPRNYQRQLGSRKYADYTKEALGECLNEIRSGKISHRKAEQKYKIPRRTILNKLKGRHSRKPEKQPIFTCDEENQFANCIISLGEYGFSVNERELRHIIKNYLSRCGRTVKIFDNNSPGNDWIKSFIARYPELSRRFAENVKRTRAAVNEPMLRTFIQNLSKELIDVPATNIWNFYETNLTDDPGKKKVLVKKGSKYPEMIRNASKTSISVMFAGNAAGELLPPYVVYRATKMWTTWTENGPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01184434;
- 90% Identity
- iTF_01184408;
- 80% Identity
- -