Pcog041224.3
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000214.1:1634987-1637116[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-10 6.4e-07 31.3 0.0 2 39 17 55 16 61 0.89 2 2 9.7 1e+04 -1.4 0.0 22 34 135 147 121 152 0.71
Sequence Information
- Coding Sequence
- atggtcagaaattacaagaaaaagggaactaggagtggagaggtagacgaacaggcaatgttaaaagctatcgatgaagttttggaaaacaagctctcttttcggaaatcagcagccaaatatggagttaATGCACAAACACTACATAGCCGTATAAAAAAATTACGCAAAACACAAGATCGTGAAGAGGATCTTTTGAATAAATATATCTTAGAGTGTTCTAAGatgcattatggattgacgtgtgtccaagttaaaaaacttgcatatgaatttgctaaggccaatgagattaaatatccttcaagttggaatggtaataagatggcgggagcagactggttagcaagtttccgaaaacgcaataaaaatttaagtttgcgtaaacctgaaaatactagtgctgccagatcattcggtttcaacaaaacggcactgaatgatttcttccagaacctggagaatatataccgcaaatacaattttactgccgatcggattttcaactacgacgaatctggtatttcaactgtgctaagcacacctaacatttttgctgaaaagtgccaaaaacaggttggtcaaatagtgtctgccgaaagaggagagctggtcacatttggtggtattatatcagcaagtggaaacaccataccgcccttattcatcttccctcgagtacattttaaggagcactttatagagggtgctccagaaggctctttgggtgtagccacgaatattaccagtgcttatgaaaaaaccggaatatggccttttaataagttgattttcaatgatgatgattttgCGCCGGTTCAGGTGTATCATTCAAATCCTGTAACAAATCCCAATATAAGCACAAGTGGTGATGAGCTTGCAATAGCTGGTGATGAGCTTGCTACAGTTGGTGTTGAACTTGGTGATGTTACTGCTCGAACACCGCCGACTTTGTCCAGAGATGTATCGCCTACATTGCTTTCACAACAGCTTGCATCAACAGTGATAGATCTTGATAACCCTGCACCATCTACTTCCAAAGTATTGAAGACGCCAGAAATGATAAGGCCTTTCCCGAAAGTTCAAAGACGCACACAAACAAAAAAAGGTCGATCACTTGGAAAATCGAGAATTTATACGGACACGACCGAAAAGAATAGAATCGAAGAATTGGAAAACATCAAAGAGATGAAGAGATTAGAAAAAGAACGAAAAAAAAACGAAGAAGAAGATGATCGTGAAGTGCCGGTTGACCCTGAAAATGTCAAAGATGGTGACTATGTGCTTGTAAAATTTGAAAAAAAGAAGTCCGTTATTTACTATGTCGGACAAATCATCAAACACTACAGTTTGACAGAAGTAATGGTTTCATTTTTGAAGAAGAAACCAGGATTTTCTATAAATTTTGTCTTTCCAAACGTCAAAGATGAAGGCTCAGTAGATCTATCAGATATTGTTTTGATATTACCGGATCCTAAATCAGCTAAGACAGCTAGGACCGCCAACATTTTTAGTTTCAACAAAGATCTCTCTTTTTATAACGTACATTAA
- Protein Sequence
- MVRNYKKKGTRSGEVDEQAMLKAIDEVLENKLSFRKSAAKYGVNAQTLHSRIKKLRKTQDREEDLLNKYILECSKMHYGLTCVQVKKLAYEFAKANEIKYPSSWNGNKMAGADWLASFRKRNKNLSLRKPENTSAARSFGFNKTALNDFFQNLENIYRKYNFTADRIFNYDESGISTVLSTPNIFAEKCQKQVGQIVSAERGELVTFGGIISASGNTIPPLFIFPRVHFKEHFIEGAPEGSLGVATNITSAYEKTGIWPFNKLIFNDDDFAPVQVYHSNPVTNPNISTSGDELAIAGDELATVGVELGDVTARTPPTLSRDVSPTLLSQQLASTVIDLDNPAPSTSKVLKTPEMIRPFPKVQRRTQTKKGRSLGKSRIYTDTTEKNRIEELENIKEMKRLEKERKKNEEEDDREVPVDPENVKDGDYVLVKFEKKKSVIYYVGQIIKHYSLTEVMVSFLKKKPGFSINFVFPNVKDEGSVDLSDIVLILPDPKSAKTARTANIFSFNKDLSFYNVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -