Pcog041718.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000215.1:323966-324832[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-10 2.6e-07 32.5 0.0 2 39 17 55 16 59 0.89
Sequence Information
- Coding Sequence
- atggtcagacattacaagaaaaagggaattaggagtggagaggtagacgaacaggcaatgttaaaagctatcgatgaagttttggaaaacaagctctcttttcggaaatcagcagccaaatatggagttaATGCACAAACACTACAAAGCCGTATAAAAAAATTACGCAAAACACAAGATCTTGGTAACGAAACTCGTGTATTCGAATCTAAATTTGCATcgcagcaagtttttacaaatacagaagaggatcttttaaataaatatatcttagagtgttctaagatgcactatggattgacgtgtgtccaagttaaaaaacttgcatatgaatttgctaaggccaatgagattaaatatcctgcaagttggaatgataataagatggcgggagcagactggttagcaagtttccgaaaacgcaataaaaatttaagtttgcgtaaacctgaaaatactagtgctgccagatcattcggtttcaacaaaacggcagtgaatgatttcttccagaacctggagaatatataccgcaaatacaattttactgccgatcggattttcaactacgacgaatctggtatttcaactgtgctgagcacacctaaaatttttgctgaaaagtgccaaaaacaggttggtcaaatagtgtctgtcgaaagaggagagctggtcacatttggtggtattatttcagcaagtggaaacaccataccgcccttattcattttccctcgagtacattttaaggaccactttatagaaggtgctccagaaggctctttgggtgtagccacgagaagtggttggataaactcgatcatttttgTTTGGTGTTGTAGGCGTTCACTTTGTGGTACATCTTAA
- Protein Sequence
- MVRHYKKKGIRSGEVDEQAMLKAIDEVLENKLSFRKSAAKYGVNAQTLQSRIKKLRKTQDLGNETRVFESKFASQQVFTNTEEDLLNKYILECSKMHYGLTCVQVKKLAYEFAKANEIKYPASWNDNKMAGADWLASFRKRNKNLSLRKPENTSAARSFGFNKTAVNDFFQNLENIYRKYNFTADRIFNYDESGISTVLSTPKIFAEKCQKQVGQIVSVERGELVTFGGIISASGNTIPPLFIFPRVHFKDHFIEGAPEGSLGVATRSGWINSIIFVWCCRRSLCGTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091691; iTF_01184405; iTF_01026090; iTF_01027255; iTF_00422272;
- 90% Identity
- iTF_01184405;
- 80% Identity
- -