Palb011107.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017773.1:9622663-9629639[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0006 0.086 14.2 0.7 1 23 270 292 270 292 0.97 2 10 6.2e-05 0.009 17.2 0.8 2 23 307 328 306 328 0.97 3 10 0.71 1e+02 4.5 1.4 1 23 357 378 357 378 0.81 4 10 2.4e-06 0.00034 21.7 0.5 2 23 385 406 384 406 0.96 5 10 3.6e-05 0.0052 18.0 1.3 1 23 427 449 427 449 0.98 6 10 1.2e-06 0.00017 22.7 5.7 1 23 455 477 455 477 0.99 7 10 0.0017 0.25 12.7 4.8 1 23 483 505 483 505 0.98 8 10 7.6e-06 0.0011 20.1 0.2 1 23 511 533 511 533 0.98 9 10 6.1e-06 0.00088 20.4 0.1 1 23 537 559 537 559 0.98 10 10 0.0076 1.1 10.7 0.1 1 23 568 591 568 591 0.92
Sequence Information
- Coding Sequence
- ATGAATTACAACATTGAAATGTTACGCTTAGGAGATTACCGCTCTGGGCAAACAATTTTGACTAGCCCAACAACCTGCGTGAATCAAGATTTTGCCCTTTGCAAATATGGTCAAAATATGCAATTCATGTGGGTTCTGTGGGCTCTTTggattctaataaaatttgagagaTGGATTTGGAAGACAATGAAGCCTTTAGAAATTCGAGACCTCGAGGATGAAATTCCGGCTAAcagaataattaatataagttCTAGCGATGTCCTCCAAAGTGAAATTTCCTTTGCTGaaagtaacaattttattgaaataattgaagaagATGGTCTCGAAGAAGTTGTTGAATATATCGAATATAGCGATGATGAAAAAATTACAGTCGAGGAACAAAGTAATCATACAGAAGATGGTTACATTAATGAAAAGGatgtaattattaaagtaGAGCCAAACGATGGAGAAGAGGAGTTACTGAATCAAGATGATACAATGGAGCTTTATCATTGCAGTTCATGTGATACGAATTTTCATTCAGTTGTTGATCACATCAATGAATTCCACAAAGATCAATCGGTGCTTGTTGATACTGGTGATAAGGATTCATCGGCAAGCATTGACGCTAATACTATTAAATCTGAGGaatctaattttttagaaaatactccttattcatatttgtttgaagattcgaaaagtaaaaaaattgaaatgattaGTGAGGAAAAATGCATCGATTCGAATGGAAGGCCTTATATGAGAAAGATAAATCCGGTTAAAGAGCTTAAGTATGGTAGTGAAGCCAAAGTGTACGCCTGTCCCGAATGTGGCATTCTTTTTCAAACTCATCGTTCTTTAAGTAGTCATTTAAAACTCCATAAAAATGAGAGTAAAGAGAATCCTACACGCGAAACAGAAACACGATGCGATGTTTGTAATACAGTTTTCCCAACAGTGAAAAGTTTgaaATTGCATAGGCGTATGCATGGTCCAATTAAATCGAAAGCTATAGAAGAAGCTGTGGGATACGAAATCAAATCCGTTTCAAGGGACGGAACTCCAAAAGAAACATTCTTTTGTGAACTTTGCAATAAAAGCTATGATAAAGTGTTTCAAGAAGTTCACAAAAAGGCACATAAATCTGGACCAAAGCTTATTTGTCAAATAtgcaataagaaattttctaataaagttAATCTAGGGATGCATATGAAAATCCATAAGGATCAAGTTAAATCTAAAACGCCGACTAAAGCTGAAGCTTCTGGTATAACTCTACCGTACGAATGCTCCTACTGTGGAAGACAATTCGCTAGGCCTCATGAAAAAGTTAAACATGAAAGAATTCATACAgGCGAAAAACCttataaatgtgaaatttgcGGTAAATGTTTTCGGGTATCCTACTGTTTAACACTTCATCTAAGAACACATACTGCAGCGCGTCCATATGTTTGTGCACATTGTAACAAaagatttaaaGCATATTCGGTGTACAATCATCATTTGATGACTCACTCAGAGGATAGACCCTACAAGTGTCCTTACTGTCCGAAAGCTTTTAAAACTGCAGTTCAATTGGGTGGCCACAAAAATAGCCACACAAAACCTTTTAGTTGCCCAGAATGCAATAGACCCTTTGCATCTTTATATGCTGTTAAAGCGCATATGGAAACGCATAAAAAAGGAAGCACAAATTTGAAACATCGATGCGGTATTTGTGGAGCTATATATGCCAGAATTTTCGCATTACGGTTACATATGGGGGAGCAGCATCAGACTAGTTTGAATGAAGAATCTGAAACCTCAGATGTGGTAATTTCGGATGGAGCTACGTTGGagaatgaaaatattacttcTACACAGTCAATTATGCCGGACAATGATGATGAGatAACTGTAGGTGACTTGGAACACTTTCAAACGGAGGAAGTTGTTACAGACTGGTTGAAATAA
- Protein Sequence
- MNYNIEMLRLGDYRSGQTILTSPTTCVNQDFALCKYGQNMQFMWVLWALWILIKFERWIWKTMKPLEIRDLEDEIPANRIINISSSDVLQSEISFAESNNFIEIIEEDGLEEVVEYIEYSDDEKITVEEQSNHTEDGYINEKDVIIKVEPNDGEEELLNQDDTMELYHCSSCDTNFHSVVDHINEFHKDQSVLVDTGDKDSSASIDANTIKSEESNFLENTPYSYLFEDSKSKKIEMISEEKCIDSNGRPYMRKINPVKELKYGSEAKVYACPECGILFQTHRSLSSHLKLHKNESKENPTRETETRCDVCNTVFPTVKSLKLHRRMHGPIKSKAIEEAVGYEIKSVSRDGTPKETFFCELCNKSYDKVFQEVHKKAHKSGPKLICQICNKKFSNKVNLGMHMKIHKDQVKSKTPTKAEASGITLPYECSYCGRQFARPHEKVKHERIHTGEKPYKCEICGKCFRVSYCLTLHLRTHTAARPYVCAHCNKRFKAYSVYNHHLMTHSEDRPYKCPYCPKAFKTAVQLGGHKNSHTKPFSCPECNRPFASLYAVKAHMETHKKGSTNLKHRCGICGAIYARIFALRLHMGEQHQTSLNEESETSDVVISDGATLENENITSTQSIMPDNDDEITVGDLEHFQTEEVVTDWLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628590;
- 90% Identity
- -
- 80% Identity
- -