Basic Information

Insect: Philonicus albiceps
Gene Symbol: -
Assembly: GCA_963969385.1
Location: OZ017774.1:28787204-28790911[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.7e-06 0.0013 19.9 2.7 3 23 182 202 181 202 0.98

2 10 0.0015 0.22 12.9 5.8 1 23 208 230 208 230 0.97

3 10 0.00029 0.041 15.2 0.2 1 23 239 261 239 261 0.97

4 10 8.6e-07 0.00012 23.1 1.9 1 23 267 289 267 289 0.99

5 10 0.00018 0.026 15.8 1.6 1 23 295 317 295 317 0.98

6 10 8.8e-06 0.0013 19.9 1.2 1 23 323 345 323 345 0.97

7 10 1e-07 1.5e-05 26.0 0.5 2 23 351 372 350 372 0.97

8 10 9.1e-06 0.0013 19.9 2.2 1 23 378 400 378 400 0.98

9 10 3.4e-06 0.00049 21.2 3.5 1 23 405 427 405 427 0.97

10 10 0.0015 0.22 12.9 4.4 1 23 433 456 433 456 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.7e-06	0.0013	19.9	2.7	3	23	182	202	181	202	0.98
2	10	0.0015	0.22	12.9	5.8	1	23	208	230	208	230	0.97
3	10	0.00029	0.041	15.2	0.2	1	23	239	261	239	261	0.97
4	10	8.6e-07	0.00012	23.1	1.9	1	23	267	289	267	289	0.99
5	10	0.00018	0.026	15.8	1.6	1	23	295	317	295	317	0.98
6	10	8.8e-06	0.0013	19.9	1.2	1	23	323	345	323	345	0.97
7	10	1e-07	1.5e-05	26.0	0.5	2	23	351	372	350	372	0.97
8	10	9.1e-06	0.0013	19.9	2.2	1	23	378	400	378	400	0.98
9	10	3.4e-06	0.00049	21.2	3.5	1	23	405	427	405	427	0.97
10	10	0.0015	0.22	12.9	4.4	1	23	433	456	433	456	0.97

Sequence Information

Coding Sequence: ATGGTAGATGGCTTACCAATATGCAGGGTGTGCCTTAAAAGTGCTATGGAATGCGTCGACCTAGAGACTCCTTTGGAAGACAACGAAGGCATAACTTACCGCGAGAGTTTTAACATTTCAACTCAACTGAATGCTCTTGAAGATGACGACTTTCCGAAAAATCTCTGTTGTTCCTGCGCTGAGGAGCTCAAAATAGCCTTCCAGTTCATTCAAAGAGCCGTTGAGTCTGACCGTGTGCTAAGGAATAAAACCGCTGTTCAATTGGCACAAGACGGTGAAAGCGATTGCTCCATACTGCTAGAAGATAAATCCAGCGATGTGAAACCGGAGAATGATGGCAGTGATAAGCAAAGCGAAGAGGAACtagttgtttttgaaattcgcGAGTTCCCAGAGACTGCAGATGTGTCTGGGAGCAAAGCTGAAGATGCGGAATGTAGCGAGGAATATGACCTCAAAATAGAATACGATGATGAAACGACAACGGAGCAATTTCCAAGGAAGAGTACGAAGCAATCCATCAAGAATAAGAAACTTTTACTTTGCAATGTTTGCGGGAAAACTTGTTCGCAGAAGTCCACGTTAGAATCTCACTTACTAAAGCATAAAGGTGAACGGCCTCATAAATGTAACCAATGCAACAAAtcatatttcacaaaaaacgGACTTCAAATGCACTTAATTCATCATACAAGCAAGGCCGaacaaaaaaagtttatttgcgATATCTGCACCAAAGGTTTTGCTACCGCTCAGCGGCTGCGAGTGCACAATCTAACGCACACTGgggaaaagaattttgaatgcGATTACTGTCcCAAAAGATTTGCCACCCAATTTCGATTGCGTAGTCACTTACGCACTCATACCGGTGAAAGACCTTACGAATGCAACGTTtgtggaataaaatttaaccagAGCAACGTCCTCAAGTGCCATATGAGAATTCATACTGGCGAAAAGCCATACGAATGTAAAGTTTGCGGAAAGCGATTTAGCCAGAACACTATTCTAAAAACACACATGACGCTGCATACTGGGAAAACTGTTAAGTGTCCCAActgtgataaaaaatttagtagacCGTCGTATTTGATACTCCATCAAAGGGAGCACACGGGGGAAAAGCCCTATGTTTGCCCCAAATGCCCGAATCGGTACAAACAAAAAAGCCATCTCGACCGGCATTTGGATACCCATTTGGGCGTGAAGCATTCCTGCAGCGTGTGTGGGAAACAGTACTCGAAAAAGAGCTCTTTAAAGATTCATATGTTCACCCATGTTGAGGAGAAACCTTTCCACTGCGACTTCTGCGCGATGTCCTTTACGAGGAGAGATAAatataGAAATCACCTGAAGAAAGCACATGACAAAGATTTAATCAACAACGAAGTAGCCGATATCGGAGATTGTGCTAAGGATGATCCGAAGAATAAAGAGAGTTATCTTggtatttcaaatatattagcAGGTGCAGAAGATGGTGAGATTCATGGAACTTCAACTAGAAGTGAAAGTAGTGACGACTTAAGTTCAGACACAAATACAATCTTAATAATGTAA
Protein Sequence: MVDGLPICRVCLKSAMECVDLETPLEDNEGITYRESFNISTQLNALEDDDFPKNLCCSCAEELKIAFQFIQRAVESDRVLRNKTAVQLAQDGESDCSILLEDKSSDVKPENDGSDKQSEEELVVFEIREFPETADVSGSKAEDAECSEEYDLKIEYDDETTTEQFPRKSTKQSIKNKKLLLCNVCGKTCSQKSTLESHLLKHKGERPHKCNQCNKSYFTKNGLQMHLIHHTSKAEQKKFICDICTKGFATAQRLRVHNLTHTGEKNFECDYCPKRFATQFRLRSHLRTHTGERPYECNVCGIKFNQSNVLKCHMRIHTGEKPYECKVCGKRFSQNTILKTHMTLHTGKTVKCPNCDKKFSRPSYLILHQREHTGEKPYVCPKCPNRYKQKSHLDRHLDTHLGVKHSCSVCGKQYSKKSSLKIHMFTHVEEKPFHCDFCAMSFTRRDKYRNHLKKAHDKDLINNEVADIGDCAKDDPKNKESYLGISNILAGAEDGEIHGTSTRSESSDDLSSDTNTILIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00936758;
90% Identity: iTF_00717987;
80% Identity: -