Palb009494.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:70273920-70282077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0015 0.21 12.9 2.8 1 23 183 205 183 205 0.98 2 19 1.5e-07 2.2e-05 25.4 1.9 2 23 211 232 210 232 0.97 3 19 0.0052 0.75 11.2 0.1 2 23 239 260 238 260 0.96 4 19 0.00045 0.065 14.5 0.5 1 23 304 327 304 327 0.95 5 19 2.7e-06 0.00039 21.5 3.8 1 23 341 363 341 363 0.96 6 19 1.3e-05 0.0019 19.4 1.2 1 23 369 391 369 391 0.97 7 19 1.1e-05 0.0016 19.6 1.6 1 23 397 419 397 419 0.97 8 19 2.9e-06 0.00042 21.4 2.3 1 23 425 447 425 447 0.97 9 19 0.00034 0.049 14.9 0.7 1 23 453 476 453 476 0.94 10 19 0.012 1.7 10.1 1.3 1 23 650 672 650 672 0.95 11 19 0.33 47 5.5 0.2 1 23 677 698 677 698 0.90 12 19 0.00012 0.018 16.3 0.1 2 23 705 726 704 726 0.96 13 19 1.6 2.3e+02 3.4 5.1 1 23 737 760 737 760 0.96 14 19 0.00073 0.1 13.9 0.3 1 23 768 791 768 791 0.92 15 19 6.7e-06 0.00096 20.3 1.3 1 23 803 825 803 825 0.95 16 19 5.1e-05 0.0073 17.5 1.7 1 23 831 853 831 853 0.97 17 19 2.3e-05 0.0033 18.6 2.8 1 23 859 881 859 881 0.97 18 19 4.4e-06 0.00063 20.9 1.5 1 23 887 909 887 909 0.97 19 19 9.5e-06 0.0014 19.8 1.3 1 23 914 937 914 937 0.98
Sequence Information
- Coding Sequence
- ATGGAATATGTTCAAGGATGCTGCAGGATTTGTTTAGTTAACTACTTCAAGGGCCAATCgttatttattacttacaaTAACGAATACTTGCCAGAAGTCATAGCAAACATATCTGGAATTCATGTAAGTGAGGACGATGGACTGCCATCTACAGTTTGTGTTGATTGCGCTGATCTCCTACTGCAGGCACAGAACATTAAGAGAGCGTGCCTGTCCTCTGACGTTCTGTTGCGATCACAAATCAACGCAATTTTTAGCGAACAAGAGCACTCTGAATTGAGAAATAAAGACCTGGAAGACAGCATTATTTGGAGTCAgttaaacgaaaatattttcgatagcCTCGTTCAGGcggaaaatgatgaaaatctCAGGCAAGAGctcgataaatattttgaaacaaattccACCAAGGGAGATAGTCAGCACACAGACGAGCAACTGGAAGAACAGTTTTCAGACGGCGACCAGCTAAGCGAAAAGCTCGTTAAAGAAGACTGTAATAGTTCAAAAGGAGATGAGGATCTAAACGTTCCTCCCCAGTCGTATGTCTGTAGCTTATGCTCTAAAaagtttgtaaacaaattagcCTTCAGCAGACACAAAAAGTACCATTCGCAAGACAAAACCAAATGCCCTATTTGTCCGCGAGAATTCTCCCATAAATCCAACCTCAAGAGGCACCTCTCAGTGCACCGTGAAGACTGCGAACTGGTTTGCAACCAATGTGGCGATGTTTTCGGCAATTCTAAAGAACTTTATGAACACCTTAAGGGGCACAACAAGTCCAGTGACGAGGACAGAGACGAATATGTCCTGGATTGCGGACTGTGCGAAAACAAAACGATTTCCCTGGCCAGCCACTTGGTCCATATGAGGGAAAAACACAACGTGGAAGACGCAAAGCCCTTTAAATGCTCCCTGTGCGGAATGAAATTCGCATCGAAACAGGGGATGTATCGGCACATCGATAATATCCACGAAAACAATCGTCGGAATTTAAGAAATCGCGACAAAAATTTCCTCTGCAACACTTGCGGTAAGAAATTTTACACGAACTTCCACTTGGAAGTGCACATGCGATCGCACACCGGCGAACGACCCTTCAAGTGCCAGGTCTGTGAGAAGTCTTTCTCTCAGCTATCGGGGCTGAAAATGCACACGTTCATCCACACCGGTGAGAAACCTTTCGCTTGTAAGATTTGCGGAAAGAGGTTCAACCAGTACGGTCACGTTCGGGAGCACCTCTTGACCCACTCCGACGAACGGCCTCACGTCTGTAAGGTATGCAACCATTCGTTCAGGGTTAAGGGAAATTTGACTGCACACATGATGATCCACACGGGAAAGAAACCGTTCTCCTGTAAGAGCTGCGGAAAAGGATTCATGCAGCGCGGTAAACTGAAAGCCCACGCTGATAAATCTCATGCAGGATCTGCGAAAATTTTAGAGCATGGACTAAAATTTCCGCGGGACAAGGAAACCGCCGACCTCTGGCTAAAGGAAATCGGTAGAGAAGGGGTTCCGATTAATGATAATAGATTTGTTTGCGAGGATCACTTCGAGGATACATTCATTTTCCAATGGAAAGACAGAAAAGTTATTGATAAGGAGGCGACACCTTTTCACGACTACAGGGCGTGCATGACTTGTTTTAATTCCGATAAGGCGAAAGAAAGATTGGAAGGAGAAGAAATATTGGAAGGAGAAGAAAGTCCAAACAAAAAAGAGGATAATACAAACATGAATGAGAGtgtaaaaatatcagaaaatacGCAAAGCAAGGAAGAAGAGCATTTTCTTGAAGCTCAATATTTAGATGATGCTGATGTCCTTTATGATGAACTATTTTCAGAAACCAACGTTCAATACAAAGAAGACGTTGAACTGAGCAGCGATAGTGCCAATCCTGACCCTTTGGGCATGGGAATTATTCTccctgaattatttttgtgtacTGTATGTTCAAGAAAAATTCCGAATTTAAGGGCTTTTAGACGCCACCAGAGATACcacaattctgaaaatttcagGTGTCCAATTTGTCCAGAGGAACTTACACCTCAAACGATTAAAGATCACCTGTACAAACACAAAGAAAGGGAAGAATTAATTTGCGGAGATTGTGGCAAACATTTCGACGATATAGTAGATTTATACAATCACATAATTACACATGCAAAAGCatacagaaaattattatatattcatGAATGTGAAATCTGTCACAGAAAGACGCCTTCCTTGGCAAGTCATCTAAACCATATGAAAAGAAGGCATAATATACAAGTGCAAAAGCCATTTCAGTGCAGCAAATGTGGAATAAGATTTACTGCAAAGCTGGGCTTACAACGCCACGAGGAGAATATCCATAATCATGAGCGCCGTTTGAATCGGGAAAAGAAATTCCTTTGCTCGACGTGCGGCAGGAGGTTTTTCACAAAAGGCACCTTGCAAGTGCACATTCGTTCGCATACTGGGGAGCGCCCGTACAAGTGTAAATACTGcgataaaacattttcccaAATTAATAGTGTAACTGTACACACGTACATTCATACTGGCGAAAAGCCTTTCATCTGCAGTGTATGCGGAAAACGGTTCAAGCAATACTCCCACTATGATTATCACATGTTAATCCATGCGGATAAACGACCTCATGTGTGCAAAATATGTAATCGTGCCTTCAGAGTGAGGGGTACGCTTAATACGCATATGAAGATTCATGGAAATAGGCCATTTAGGTGCGAGACCTGTGATAAGGGCTATCCAGAACGGTCGGGATTGAAAAAACACATGAAAAAGCGTCACGGTGGTGAATGGAATGCACCTCCTAAACAGGAGGAAGAAGTGATTGTTGTATAA
- Protein Sequence
- MEYVQGCCRICLVNYFKGQSLFITYNNEYLPEVIANISGIHVSEDDGLPSTVCVDCADLLLQAQNIKRACLSSDVLLRSQINAIFSEQEHSELRNKDLEDSIIWSQLNENIFDSLVQAENDENLRQELDKYFETNSTKGDSQHTDEQLEEQFSDGDQLSEKLVKEDCNSSKGDEDLNVPPQSYVCSLCSKKFVNKLAFSRHKKYHSQDKTKCPICPREFSHKSNLKRHLSVHREDCELVCNQCGDVFGNSKELYEHLKGHNKSSDEDRDEYVLDCGLCENKTISLASHLVHMREKHNVEDAKPFKCSLCGMKFASKQGMYRHIDNIHENNRRNLRNRDKNFLCNTCGKKFYTNFHLEVHMRSHTGERPFKCQVCEKSFSQLSGLKMHTFIHTGEKPFACKICGKRFNQYGHVREHLLTHSDERPHVCKVCNHSFRVKGNLTAHMMIHTGKKPFSCKSCGKGFMQRGKLKAHADKSHAGSAKILEHGLKFPRDKETADLWLKEIGREGVPINDNRFVCEDHFEDTFIFQWKDRKVIDKEATPFHDYRACMTCFNSDKAKERLEGEEILEGEESPNKKEDNTNMNESVKISENTQSKEEEHFLEAQYLDDADVLYDELFSETNVQYKEDVELSSDSANPDPLGMGIILPELFLCTVCSRKIPNLRAFRRHQRYHNSENFRCPICPEELTPQTIKDHLYKHKEREELICGDCGKHFDDIVDLYNHIITHAKAYRKLLYIHECEICHRKTPSLASHLNHMKRRHNIQVQKPFQCSKCGIRFTAKLGLQRHEENIHNHERRLNREKKFLCSTCGRRFFTKGTLQVHIRSHTGERPYKCKYCDKTFSQINSVTVHTYIHTGEKPFICSVCGKRFKQYSHYDYHMLIHADKRPHVCKICNRAFRVRGTLNTHMKIHGNRPFRCETCDKGYPERSGLKKHMKKRHGGEWNAPPKQEEEVIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -