Palb023403.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philonicus albiceps
Gene Symbol
ZNF236
Assembly
GCA_963969385.1
Location
OZ017775.1:11577628-11583278[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00014 0.02 16.1 1.6 2 23 154 176 153 176 0.95
2 20 0.00012 0.017 16.3 0.8 1 23 182 204 182 204 0.98
3 20 9.8e-05 0.014 16.6 0.2 2 23 210 231 210 231 0.97
4 20 0.0074 1.1 10.7 0.3 1 23 237 260 237 260 0.97
5 20 7e-05 0.01 17.1 0.2 1 23 287 309 287 309 0.94
6 20 0.00011 0.016 16.5 0.8 1 23 315 337 315 337 0.95
7 20 9.3e-07 0.00013 23.0 0.1 1 23 343 366 343 366 0.97
8 20 0.036 5.2 8.6 4.3 1 23 376 399 376 399 0.92
9 20 0.00012 0.018 16.3 0.2 2 23 500 521 499 521 0.97
10 20 8.1e-05 0.012 16.9 0.9 1 23 527 549 527 549 0.99
11 20 0.0036 0.52 11.7 1.8 1 23 560 582 560 582 0.98
12 20 8.7e-05 0.013 16.8 3.0 1 23 588 610 588 610 0.95
13 20 0.00018 0.026 15.8 3.3 1 19 645 663 645 667 0.96
14 20 0.00039 0.056 14.7 1.9 1 23 673 695 673 695 0.96
15 20 0.00011 0.016 16.5 5.2 3 23 703 723 702 723 0.96
16 20 4.3e-05 0.0063 17.7 3.9 1 23 729 752 729 752 0.97
17 20 8.8e-07 0.00013 23.1 1.5 1 23 1194 1216 1194 1216 0.97
18 20 0.001 0.14 13.4 2.2 1 23 1222 1244 1222 1244 0.96
19 20 0.00028 0.041 15.2 0.3 1 23 1251 1273 1251 1273 0.98
20 20 3.7e-06 0.00053 21.1 2.7 1 23 1279 1301 1279 1301 0.99

Sequence Information

Coding Sequence
ATGTTGGCTGGATTAGACACTGGTAATGAGCCCGGCTCCTTCTTCTTCTGGCGCGGCGAACGCTTTTTTATCCATCCCCCCCAGCCGAATGCAGCCAGCAATTTGAATGTTCTGCTGTGGAGTGACACACTTCCGATGAGTTCGAACGATGGAACATTTAGTGAAATTGGAGTAGGAGAGAGCTACACAAAATCTTTGTTTACATTCAATGAGGCCGACACGGACTTTTTGAGTACAAATGATTTCGTGGCCCTGGATCTTGATGGAGTGGTGGACTCCTTCAAGTCGTCTGCAGCACAGCCTACGTTTACAGGCAACGAAGATGTACAGCTCCAAGATCTGGTTTTAGGGAATGTGGAGGACAAATCAACTCCAGACGAAGATAATGCTACTAATCATCCAGCTAAAGTTAGAAAAAAGAGGAAGAAACGGGCTGCGCGGAGTTTCGAAAAATCTCTTCGCTGTGACCTCTGCGATGAAACTTTCATCCATTCCAGCGAGCTAAAGTACCACAGGTCCTCCATGCACCAATTGGCTAAGCTCTACCGTTGCGAAGAGTGctcaaaagaatttaatttcgaaaggAATCTGTTCCTGCACATTGCTTCCCACAGTTCCGCCCCCGCAGAATGTCCAGAGTGTGGTAGGAGGTTTCAGAGACTATCCAGCTTCATAGGGCACCTTGAAACCCATGCAGAAAACGATAACTTTCAATGTCAGGCTTGTGGTGAGGAGTTCGAGTTCGAGGAATACTATGAGAGACACCTGGAAAAAGACCATAGAGGAGGAGAAATGATGGCTGCTTTGCTTGTTAAAAAGAGGAATTCAAGAAACACCAGTGTGGGCTACAACGGAAAGTTTATTTGCAAATCTTGCGGAAAACGATTCCCAAAACCTAGTCTACTGCTTAGGCACGAAATAGCTCACGCCAAAGTGAAACCGTTCGCGtgtCTCGAATGCAATAAAAGGTTCAGCCAGAAAGCATCCCTGGACCGTCACAGTATGCTCCACAGTGGAATCAAGCCCTACGACTGTCCTGAGTGCGGAATGGGtttttctcAACGCACCAACTTAATAACTCACATAAAACGAGTGCACACAACTAATGAAAACGCAGAAGTGCAATTCCCGTGCAATAGCTGTTCCTGTGTTTTTAGTAAACTTAAAAGTCTGACTCGCCATAAGACGCTGAAGCATTCAACCaagactgaaaataaaaaaaccgaATTAACTTTTACTGAAATTCTCGAGCATATCATGAGTTTGCATGACCAAAATATAAGTCCTCAAACGATTTGCTCCAGCAACCAGGTCACTATGCCTGTAGGAGATCGGATCGTTCCTAATCAGGTATCGGAGATCCAGGCACCTGTTCCAGAATGCCCTCCTTCTCCTGTAAAAGTGCAGTTCGTTAACGTTGTGGACCGTCAATACCCGACTAAGGAAAAGGTTAATCGAATAGTAAAAGAGATTAACATTGATGGAGTCAAGTGGCTTGAGTGCCCCTACTGCCCGAAAAGGTTTCAGATGCCCTTTGACATCGTCAGgCATTTGCGTACACACACCAAAGAAAAGCCTTACAAATGCGAATATTGTGGTCGAAAGTTCgccttaaaaaatacaatggaATTACATCTGAAAATACACAGGAAGAAACCGAATGAAATTACTAAACTTTACCACTGCACTTATTGTCAGATGTCGTTTGATTCAATCAGAAGTTTGGACATGCACGTACGcATTCACAGCAATTATAAACCTCACGCTTGTTCAATATGCTTCAAAACGTTCAAAAGTAATGATAATTTAAGATTGCACAAAACAATCCACGAACCGAAAAATCCAGACAACGAAAACATAAAGCGCCAGCTTCTTCCTCCCATAATTCAGAATCCAGAAGAAAAGCCAGTGGAGGATCAAAGCGTGCGAATTTACCAGTGTGAAAAATGTGGCCAAAGATTTAAGAAGTCTTCTCACCTAGCGCAACACGATTTCAGCCACCTTAGCCTGAAGGCTTTTCAGTGCGAAGTATGTAACAAATATTTCTCCACAAAGAGTTCCCTAgggtttcatcaaaaaattcatcTGGGCCATAAGACTGCTCCCTGCGAAGTGTGCCACAAACAATTCTGTCGGAATAGCGATTTAAAGAGACACAAATCAGTACACAgcaattttcgtaatttcatATGTCCGTATTGCAAAAAGGCGTTCAAAAGAAAGAGCAGTTGCAAAAAGCATATTATAACACTTCATTTGAGAGATGTTGTTACAACAGAAGAACTAGAAAATGCCGCATCAGTTTCAGATAATGATAACAATATCCCTGACGTTGATGAGGATAGTCGTCCAGAGCCACAGGATCACCAAGTAGACCAAGATCCGAATCAAATAGTTTTCAGTATGGTTTCCATTAACGCGTCATCTAACTTAACTCAGACAAATCAGCTAGAGCTGAATCTTAACCTTCCATCCGATTTAAATCAACAAAGCACAATTTTTTCCGTTCCACCTAATTTAAATCAAGCTACTCAACCAGAGCCGATCTTTCTTTTCCCACCTGATTTGAATCAACCAGAAGCAACTGTTTCTGTTCCAGACTTGAATCAACAACATACAGATTTTAGTATTTCACCCGACATAAATCAACCAGAGGCTGCCTTTTCGAATATATCCGACTTAAATCAAACAAATACACCAGAAGTATCTTTCTCTGTTTCAGCTGATTTGAGTCAAACGTTGGTATTTCCTGTTCAATCCGATTTAAAACCAATTCAAACTGAAGCTGACCTTTCTTTTCCatctgatttaaatttaatgcatcACTCAGAAGCTATTATTCCTGTTCCACCGGacataaatcaaatgaatcaTTCAGAAATAGTGCaaactattcaaaatgttcCTAACGATATTGCTTCGCCTAGTGTCATTTTGCTGCTGCAGCCAAACCACCCAAATTCTGTGGGAAGTCATTCATCCATGCAGCAGAGGGAGAATTTAATTGTTGTCGATTTGAGAGAGcttttgaatgaaaacttCTTACCCCCTAAAAATGTTGATCTACAAGCACCAAATCTACCAGAAACTGAAATTCTTCCAGCCACTGTTCGGCAAGAAGTCGAACCACTTCCAACAGATGCTTCacaaaacattgaaatttttccatcAACTGCTTCGCACGAATATGAAACACTTCATGTAACTACTTCGCAAGAAATTAGAACACTTTCAACTGCTTCGGAAGAAATTCAGTTTCTTCCCGCAGATACTtcacagaaaattgaaatacttCCATCAATTACTTTACAAGAAACTGAAATAATTCCCACAACTCCCTTGCAGCCAAAGCCAGCACAGCCCGAATTTATAAGTATAAGCGACTTAcctaattatagtaaaaatttagctaaaaataTAGTCGTCGTATCACATGAAAAAAATCCTGATAGTTGCGATAACCTACCTGAAACAGTTTCAAATGATTCTGAACTTCAGGGAGAGGAGTTTCTTATTCAAGAGGCAGGAGCTAAATTAGCAAAGCTGACAAAGACGAAAGTACCGAAACCGAAGCCTCCACACCCTTGTTCAATGTGTAAAAAGGTTTTCCAGAAACCAAGCGATTTAATTAGACATATCCGAACTCATACTAAGGAAAGACCATTTCAGTGCGGCACTTGCTCAAAAACATTCAGCTTAAAGTCCACTCTGGacaatcataaatttattcatgatAAGGATAGACCAAGTTTTATATGCAATGTCTGCGGGAAGAATTATGCTGCAAAAAATGTTCTTCGCACTCATCTACGAATGCATACCGGGGAAAGACCGTTTAAGTGTGATATTTGCTCGAAAACATTTAGAACATCCGGACATAAAACAGCCCACATTCGGGTGCATGCAAAAATGGAAGCTACGAAGAGAAAAAAGAAGACTAAAGTTTAA
Protein Sequence
MLAGLDTGNEPGSFFFWRGERFFIHPPQPNAASNLNVLLWSDTLPMSSNDGTFSEIGVGESYTKSLFTFNEADTDFLSTNDFVALDLDGVVDSFKSSAAQPTFTGNEDVQLQDLVLGNVEDKSTPDEDNATNHPAKVRKKRKKRAARSFEKSLRCDLCDETFIHSSELKYHRSSMHQLAKLYRCEECSKEFNFERNLFLHIASHSSAPAECPECGRRFQRLSSFIGHLETHAENDNFQCQACGEEFEFEEYYERHLEKDHRGGEMMAALLVKKRNSRNTSVGYNGKFICKSCGKRFPKPSLLLRHEIAHAKVKPFACLECNKRFSQKASLDRHSMLHSGIKPYDCPECGMGFSQRTNLITHIKRVHTTNENAEVQFPCNSCSCVFSKLKSLTRHKTLKHSTKTENKKTELTFTEILEHIMSLHDQNISPQTICSSNQVTMPVGDRIVPNQVSEIQAPVPECPPSPVKVQFVNVVDRQYPTKEKVNRIVKEINIDGVKWLECPYCPKRFQMPFDIVRHLRTHTKEKPYKCEYCGRKFALKNTMELHLKIHRKKPNEITKLYHCTYCQMSFDSIRSLDMHVRIHSNYKPHACSICFKTFKSNDNLRLHKTIHEPKNPDNENIKRQLLPPIIQNPEEKPVEDQSVRIYQCEKCGQRFKKSSHLAQHDFSHLSLKAFQCEVCNKYFSTKSSLGFHQKIHLGHKTAPCEVCHKQFCRNSDLKRHKSVHSNFRNFICPYCKKAFKRKSSCKKHIITLHLRDVVTTEELENAASVSDNDNNIPDVDEDSRPEPQDHQVDQDPNQIVFSMVSINASSNLTQTNQLELNLNLPSDLNQQSTIFSVPPNLNQATQPEPIFLFPPDLNQPEATVSVPDLNQQHTDFSISPDINQPEAAFSNISDLNQTNTPEVSFSVSADLSQTLVFPVQSDLKPIQTEADLSFPSDLNLMHHSEAIIPVPPDINQMNHSEIVQTIQNVPNDIASPSVILLLQPNHPNSVGSHSSMQQRENLIVVDLRELLNENFLPPKNVDLQAPNLPETEILPATVRQEVEPLPTDASQNIEIFPSTASHEYETLHVTTSQEIRTLSTASEEIQFLPADTSQKIEILPSITLQETEIIPTTPLQPKPAQPEFISISDLPNYSKNLAKNIVVVSHEKNPDSCDNLPETVSNDSELQGEEFLIQEAGAKLAKLTKTKVPKPKPPHPCSMCKKVFQKPSDLIRHIRTHTKERPFQCGTCSKTFSLKSTLDNHKFIHDKDRPSFICNVCGKNYAAKNVLRTHLRMHTGERPFKCDICSKTFRTSGHKTAHIRVHAKMEATKRKKKTKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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