Palb005172.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:34237364-34239465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-09 5e-06 27.0 0.0 1 35 16 51 16 58 0.92 2 2 3.5 4.7e+03 -1.8 0.0 21 30 297 306 289 306 0.85
Sequence Information
- Coding Sequence
- ATGGTGCGGACTTATAAACCAAAAAAGACAAGTAGACAAGCTGTGGATGAAGAATCCATGCAGTCAGCAATACAGGATGTTATGCAAGGAGTATTGTCATATAGAAAAGCTGCGGACAagtacaatttgaaattgtcaACATTAGAAATCcgtATGCATTATGGACTTACGACGATTCAAGTAAGAAAGTTAGCATATGAGTATGCCAAATCTTTGAGTTTGAAATATCCAGCAAAGTGGGAAGAGGATAAGATGGCTGGGAAAGAATGGATGTATGGTTTTCGCAGAAGAAACCCGGAACTCAGTTTACGCAAACCCGAAAACACAAGCGTTGCCAGATCTTTTGTGTTTAACAAAACTTCGGTTACCGAGTTTTATACCAACTTGAAGACAGTGTTGGAGCGACATCGATTAACTGCTGACAGAATCTTTAATTTCGACGAATCAGGTGTATCTACCGTTCAAGCTACTCCTAAAGTCTTGGCTCCAAGATGTCAAAAACAAGTCGGACAAATTGTATCAGCTGAAAGAGGCGAGCTCGTAACTTTTGGTGGCATTATATCTGCCAGTGGAAGAGCACCCGAAGGAAGTCTCGGCGCTGCAAATAAAAGTGGCTGGATAAATAGCGATATATTCGTCTCTGTTTTAAAACATATCCAGAAGCACACACTCTGCACAAAAGATAATCCCATATTATTGTTGTGTGGCAATCATGAAAGCCATGTTTCTCTCGAAGCCATCAACTACGCCAAAGAAAGTGGCATAATTTACCTATCTTTTCCACCACATACATCTCACCGCCTACCACCACTTGATGTGGGAGTCTTTGGACCATTTAAATCaatgttgaaaattgttttcaataatgGGCATACAATGAACCCAGGCAAAGCATTGACAATTTACAATATTCCAAAGCTtgtgaaaattgcatttttcgaATCATTCACCGCAAAAAATATCACAAGCGGGTTTAACAAACCCGGAATATGGCCTCTTAATGAATTAGCCTTTAGTGACGAAGATTTTGCTCCAACTGAGGTGTATACATTAGGTAACTTAGAACATGTGCCTCCTACTCAAAACGTCGTTGAAGATTTGTCAGCACCTACTCCGCAGCCAAGTGTCTCTGATATCTGCCAACCCTCTACTTCTGGAACACAGGATTTCTTGGAGGTTCCGCGATCATCTACAGAACAAACTATTAACTCACCATTGACTTATGATGATGAACTACAAAGGTGTAATTTAGATGCTTGTGAACCAGATGCTTTGAATAATTCACCAATCCATCAAATAGTTGCTCCTTTGAAGACAGTTTTCACACCAGAGGCAATTCGACCCTATCCGACTGTTCTCATTGAAGAGAAACACAATGAAAAGCAATTGAAAAAGCTAGAACAGGAAAGAAGGGCTAGGGCAAGACAAATGAAACGTAGTTTagctgattttaatttaaaaacgaagaACAAGAAAGCTAAAAACACAGTAAGTGATGAATTTGATATAAGCTTTCAAGAGAGTTCAACTTCTATCACAGATGAAGATGAAACCGagcatgaaaattttgaaatgaacaGAAGCCAATTGACAGTTGATGTAATaccagaaaatattaaagatgGAAAAGTTGTCGGTCACTATAGTCAGACTGAATTTAAAGTATCTTATCTAAGAAAGAAGCCAGGCTTTTCGTGGACATTTGTTTTCCCTAATGTTGAAGATATTCATACTGTTTATATAACTGATGTTGAAATGATTCTTCCTGAACCTAAGCCTCCAACAGTTTTCTACTTCTAG
- Protein Sequence
- MVRTYKPKKTSRQAVDEESMQSAIQDVMQGVLSYRKAADKYNLKLSTLEIRMHYGLTTIQVRKLAYEYAKSLSLKYPAKWEEDKMAGKEWMYGFRRRNPELSLRKPENTSVARSFVFNKTSVTEFYTNLKTVLERHRLTADRIFNFDESGVSTVQATPKVLAPRCQKQVGQIVSAERGELVTFGGIISASGRAPEGSLGAANKSGWINSDIFVSVLKHIQKHTLCTKDNPILLLCGNHESHVSLEAINYAKESGIIYLSFPPHTSHRLPPLDVGVFGPFKSMLKIVFNNGHTMNPGKALTIYNIPKLVKIAFFESFTAKNITSGFNKPGIWPLNELAFSDEDFAPTEVYTLGNLEHVPPTQNVVEDLSAPTPQPSVSDICQPSTSGTQDFLEVPRSSTEQTINSPLTYDDELQRCNLDACEPDALNNSPIHQIVAPLKTVFTPEAIRPYPTVLIEEKHNEKQLKKLEQERRARARQMKRSLADFNLKTKNKKAKNTVSDEFDISFQESSTSITDEDETEHENFEMNRSQLTVDVIPENIKDGKVVGHYSQTEFKVSYLRKKPGFSWTFVFPNVEDIHTVYITDVEMILPEPKPPTVFYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -