Palb005452.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- clz9
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:36186565-36188397[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-09 8.2e-06 26.3 0.0 3 40 20 57 18 60 0.89
Sequence Information
- Coding Sequence
- ATGGTCAGACGGTACAAAAAAATACCTGGAACGAGAAACTACCGTGATTACACTGCAGAAAAGctgcaaaaatgtttgcaagCAGTTTCTGGTGGTATGTCGATTGCAGAAGCTTCTCGAGAGTACAACATCCACAGAAATACTAtctccaataaaattaataaaaaacacaagAAACGTGCtggacaTCAAGGTGTACCTTTGGATCTATTAGATCTAAGGCTCATCACCAAAGGATACCTTGACCGCACAAACAGGAAGGTtcttgcatttaaaaaaaacatgccAGGAAGAGATTGGGCTAGGAATTTTATGAATAGACAATCTGAAGAgctgaaagaaaaattcgcTATGAATATTCGGAAAAGTCGAGCGGACATTTCTAGAACGATTGTCGATAACTTTTTTGACAACTTTTCTAAAGAAGTGCCGTCCGTTCCTGGTTccaacatatttaattatgacAAAACGAATCTGTCCGACGACCCTGGAAAGAAGAAAGTCATATCGAAGCGTTCATGCAGGCGTACTGAACGGGTGATAAATTCATCGAAGAGCTGCATTTCACTCATGTTTTGTGGAAGTGCGTCGGGATACGTGTTGCCTCCATACACAGTGTACAAAGCAACACATCTATATGACAATTGGGTATTAGGTGGACTGAAAAACAGCCGTTTCCATCGTTCAGCTAGCGGTTGGTTCGATCTAGAAACATTCGAAGATTGGTTCGAAAGCTACTTTCTCGTTCATACACGGCACATTCCAGGGAAGAAAATTCTCATTGGCGACAACGTTTCGAGTCACATTTCGGTTCGAGTTGTGCAACTGTGTCAAGAAAATGATATCAAACTCATTTTCCTCCCACCTAACTGGACAAATTTGTTACAACCTCTAGATGTGACATTTTTCGGACCAATGAAAAAAGCTTGGCGCGATATTTTGGAAACCTGGAAATCAACGTCTAGAGGAAGTAAGGCAACTGGTCTCGATAAATCGCAGTTCCCTCGTCTACTCAACAATCTGATGAAGAAGATTGGGTTATCGACCAGTCAGAACATTATTTCAGGGTTCCGTGCAACGGGTATTTTTCCTCTCGATCGTCAAAAAGTGTTGGAAAAACTACCGATTGAAGATCTTGGTGCTGTCGAAGAAGGAATATCTGCCGAGATAATCGATCATCTCAAAGCAATTCAATATACCGATCAATCCTCAAGAAAACCACGAAAAAGGAGGCTGACAGTTGCTCCTGGCAAGAGTATCTCTGTTGAAGACGTGGAGAAAGAGCCAGTTCCAGGACCATCGAATTCAAAGAAGAGGAAAACAAACAAGGTTCAATCTGATTCTGATGGTGGAAATTCGGATGTTggagaagaagaagaagaagaaagagACGAAGAAGAGATTCAGAAAGCTACTCTCAGTGCGAAGGATCTGAAGAAAGGTGACTACGTGATTGTGATTTATGAAGGAGAGTATTTTCCAGGCCAAATTGTGAGCGCCAAACGTAAAAGAAACGAGTTTGACGTGTTCACAATGACCAAAACTTTGAAAAGTTGGAAGTGGAGCGAAACCCAAAAAACTGACACGTATAATCTCGAAGACATTGTGAGAAAAATTAGCGAACCAAAAGTTGTTAATAAACGTGGTCTCTACCGCGTTAAAGAGATCGAAACACTTTGGGGGAAGTAA
- Protein Sequence
- MVRRYKKIPGTRNYRDYTAEKLQKCLQAVSGGMSIAEASREYNIHRNTISNKINKKHKKRAGHQGVPLDLLDLRLITKGYLDRTNRKVLAFKKNMPGRDWARNFMNRQSEELKEKFAMNIRKSRADISRTIVDNFFDNFSKEVPSVPGSNIFNYDKTNLSDDPGKKKVISKRSCRRTERVINSSKSCISLMFCGSASGYVLPPYTVYKATHLYDNWVLGGLKNSRFHRSASGWFDLETFEDWFESYFLVHTRHIPGKKILIGDNVSSHISVRVVQLCQENDIKLIFLPPNWTNLLQPLDVTFFGPMKKAWRDILETWKSTSRGSKATGLDKSQFPRLLNNLMKKIGLSTSQNIISGFRATGIFPLDRQKVLEKLPIEDLGAVEEGISAEIIDHLKAIQYTDQSSRKPRKRRLTVAPGKSISVEDVEKEPVPGPSNSKKRKTNKVQSDSDGGNSDVGEEEEEERDEEEIQKATLSAKDLKKGDYVIVIYEGEYFPGQIVSAKRKRNEFDVFTMTKTLKSWKWSETQKTDTYNLEDIVRKISEPKVVNKRGLYRVKEIETLWGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183753;
- 90% Identity
- iTF_01183753;
- 80% Identity
- -