Palb008252.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:61421305-61421649[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.5e-13 8.8e-10 39.0 0.0 2 37 16 51 15 56 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGCACGTACAAAAGAAAGACTGATGCCGGAGAATGGTctcaagaaaaaatgaaagaggCTGTAAATAAAGTTCAGAACAAAGAGTTGACCTTACGTAAGGCTGCTGAGATTTTTGCAGTACCGTTCACGAGCTTACAGAGAAGAGTTACTTCGTCCAGGGGTATTATTAAGCGTCGAGGTGGACAGCCAGCTTTAGATGAGAACGCAGAAAAGAAGTTAGCTGACCGGCTGTTGCACTTGGCAAGTCGTGGCTTCGGAATTACACCCAAAGCGGTACGTAAGTACGCGTTTGAATTTGCAGAACGTCAAAACATAGAAcacaaatttgataaatattaa
- Protein Sequence
- MVRTYKRKTDAGEWSQEKMKEAVNKVQNKELTLRKAAEIFAVPFTSLQRRVTSSRGIIKRRGGQPALDENAEKKLADRLLHLASRGFGITPKAVRKYAFEFAERQNIEHKFDKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155002;
- 90% Identity
- iTF_01187235;
- 80% Identity
- -