Basic Information

Insect: Philereme transversata
Gene Symbol: -
Assembly: GCA_963924445.1
Location: OZ004342.1:30564404-30587367[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.058 5.7 8.7 0.7 1 23 201 224 201 224 0.90

2 9 0.00044 0.043 15.4 0.4 1 23 302 325 302 325 0.97

3 9 0.0027 0.26 12.9 5.1 1 23 329 351 329 351 0.97

4 9 0.45 44 5.9 4.7 2 23 359 379 358 379 0.96

5 9 2.4 2.3e+02 3.6 0.3 2 21 386 405 385 410 0.87

6 9 0.00041 0.04 15.4 0.2 1 23 418 441 418 441 0.95

7 9 0.0011 0.1 14.2 3.5 1 23 447 470 447 470 0.97

8 9 0.00075 0.074 14.6 2.6 2 20 481 499 480 502 0.92

9 9 7.5e-06 0.00074 20.9 0.1 3 23 510 531 508 531 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.058	5.7	8.7	0.7	1	23	201	224	201	224	0.90
2	9	0.00044	0.043	15.4	0.4	1	23	302	325	302	325	0.97
3	9	0.0027	0.26	12.9	5.1	1	23	329	351	329	351	0.97
4	9	0.45	44	5.9	4.7	2	23	359	379	358	379	0.96
5	9	2.4	2.3e+02	3.6	0.3	2	21	386	405	385	410	0.87
6	9	0.00041	0.04	15.4	0.2	1	23	418	441	418	441	0.95
7	9	0.0011	0.1	14.2	3.5	1	23	447	470	447	470	0.97
8	9	0.00075	0.074	14.6	2.6	2	20	481	499	480	502	0.92
9	9	7.5e-06	0.00074	20.9	0.1	3	23	510	531	508	531	0.95

Sequence Information

Coding Sequence: ATGAGCAGCAATATAACCAATCGAATATGTAGCACTTGTCTTTGCGGAGATCGGACTTTATTCCTACTATACCGATTACCGGACGGGATAAATCTCTTACATACATTGCTAATAAGCGACACAGATGCTTACATGGAAGGCTTCTTCAAAGACGCTGCCAGTTGGCTGGTCTGCTGGGAGTGCCGAGCTATCATAGAGAAAGTCAAGAGATTTCAACTCCAAGCGTGTACTGCTCTGAAACACTTAAAGGACATTGCTGCAGGCAGGAATAAAAAGGTGGAACTATTAAACCTTTCTCATTTATCGATACATCACAATTCACCAAGAATCGAGTGTACTATCATAGATTATCCAGAAGTTGACAAACTTGAAACCATAAAGCAAGAAAATACTGAAGAATTACAAAACAGCCCTGAACATATCTATGAAAACGAAACTGACAGTAACTATGAAGAAACAGAGTTAAAGAAAACGGAACATAAACCGCTGAAAGTTACTAAAactagaaaaaagaaaaataaattgtattccTTAACTGTAATGAATATGGAAGAATTGAAAATGGCGATTGATAAAAGAAGATTGGAGGTTACAAATgaatttaaatgtcattcttGTGTCCTTGCATTTGAGAGTGATAGTGCATTGAATAACCACAATGTGAAGATTCATAGTAAGaaaaaaaatcaCAGTATTTGCCAGATATGTCTCGCCTATATCAAAGATGAATCATTGGACGCACACACTAAGAAGCACTATAGAAACTATGCATGTAAGCTGTGTGCACATATATCGCTCACACACAAACTGATTGTTGAACATCTTAAAGAAATACACGGAGCAATTATTGGAAGTAAAAAGAAACAATTGAAAAATACCTTGATATTGGACGAGCCCGCTAGTTATCCATGTTTAGAATGCGATATGACATTTAAaAACAAAGGTGCTAAATGGAAGCACGTACAGAAATCGCACCGTACTGGGCACAAGTGCGCGACGTGCGGGAAGATATTCTCTTTCAAACACAACAAGGAAAGGCATGAGCTTTCACACACTGGCTCCCACCCTCGCACGCCATGTCCCACTTGCCACAAGCAAGTCCGCACGAGCCTCCTGCGCTGCCACATGCGCACGCACACGGGCCGCGCGTCACACGCGTGCGGGCCGTGCGGTGCGTCCTTCCGCGCGCGCGCCGGGTACCACGCGCATCTCAAGTATGCGCGCGCACACGCACCGCAAGATGTCTTAcgATACCCATGTTCTTTATGCGACAAAAAGTACCGGTCGGGCGGCGAGCTGCGCGACCACATCGCATACAGGCACGACAACCAACCGAGACACAAGTGCCCTGTTTGTGATAAGAAGCTGGCGACGCGTAGATGCGTCACGCGTCACGTGCGTCGCGCTCACGACGGTATAAAGGAGAATGCGAAAGACAAGATGTGCGATTACTGTGGACAGACCTTTAGGGACAAGAAGTGTCTTCGCGAGCACGTGTGGCGGCACACGGGCGCGCGGCCGCTGGCGTGCGCGCGCTGTGGCCGCGTCTTCAGACAACGCGCCGCGCTACAGGCGCATCTACGTCGCCTGCATGCGCACGAACTCACatag
Protein Sequence: MSSNITNRICSTCLCGDRTLFLLYRLPDGINLLHTLLISDTDAYMEGFFKDAASWLVCWECRAIIEKVKRFQLQACTALKHLKDIAAGRNKKVELLNLSHLSIHHNSPRIECTIIDYPEVDKLETIKQENTEELQNSPEHIYENETDSNYEETELKKTEHKPLKVTKTRKKKNKLYSLTVMNMEELKMAIDKRRLEVTNEFKCHSCVLAFESDSALNNHNVKIHSKKKNHSICQICLAYIKDESLDAHTKKHYRNYACKLCAHISLTHKLIVEHLKEIHGAIIGSKKKQLKNTLILDEPASYPCLECDMTFKNKGAKWKHVQKSHRTGHKCATCGKIFSFKHNKERHELSHTGSHPRTPCPTCHKQVRTSLLRCHMRTHTGRASHACGPCGASFRARAGYHAHLKYARAHAPQDVLRYPCSLCDKKYRSGGELRDHIAYRHDNQPRHKCPVCDKKLATRRCVTRHVRRAHDGIKENAKDKMCDYCGQTFRDKKCLREHVWRHTGARPLACARCGRVFRQRAALQAHLRRLHAHELT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -