Ptra012688.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- Tf2-12
- Assembly
- GCA_963924445.1
- Location
- OZ004342.1:31272519-31287485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.086 8.5 8.1 1.2 1 23 946 968 946 968 0.98 2 11 7 6.9e+02 2.1 1.8 1 23 974 997 974 997 0.83 3 11 1.6 1.6e+02 4.2 0.4 1 23 1001 1023 1001 1023 0.96 4 11 4.4 4.3e+02 2.8 6.1 5 23 1031 1050 1028 1050 0.93 5 11 0.093 9.2 8.0 0.3 1 23 1054 1077 1054 1077 0.95 6 11 0.023 2.3 9.9 0.3 2 23 1090 1112 1090 1112 0.93 7 11 8.1e-05 0.008 17.7 0.4 3 23 1122 1143 1122 1143 0.96 8 11 0.002 0.19 13.3 4.7 1 23 1185 1207 1185 1207 0.97 9 11 0.26 25 6.6 0.2 1 23 1213 1235 1213 1235 0.92 10 11 6.7e-06 0.00066 21.1 0.8 3 23 1242 1262 1240 1262 0.97 11 11 0.0049 0.48 12.1 0.5 1 23 1268 1291 1268 1291 0.94
Sequence Information
- Coding Sequence
- ATGTGTCCGGCACGAAAATATAATAAAGTGTATGAGGTAAACGAGGACAGCGACAACGACGGTTTAGGTAAGTTACCGGGACGCTATAAAATACCGTTAGAGACTGATGCTAGCCCTTGCATATGCCCTGTAAGAAAAATACCTATTGGAGTGAGGGATCAGCTACAAAAAGAGTTGGCCCGGATGGAGGAGCTTGAGGTTATAAGGAAGGTAACACACCCAACCTCATGGGTTAGTGGTATCGTTATCGTCGCTAAAAAGGATGCCAGCATTAGAGTTTGTCTGGATCCGCGACCACTTAACAAGGTGATCAGGCGGCAACACTACCCGCTGCCAACTATAACTGAAATAGCGACCAAGTTAAGGGGTGCGCGGTATTTCAGTAAGTTGGACGCGAAGTCTGGCTTCTGGATGGTTCAGTTGGACGACGCGAGCGCCGACTTATGTACGTTTGGGACACCATTTGGCCGGTACCAGTACCTGAGGCTTCCCTACGGAATTAACTCAGCGTCAGAAGTGTTTCATGCTAAGGTTCGACAGCTGCTCGAAGACCTAGAGGGAGTGGACTCCTTCGTCGATGACGTCATTGTTTGGGCGTCCACAAAAGAAGAACACGATAGACGCCTCACCTGTCTTCTAGATAGGGCGCGGTCTGTAGGCATAAAGTTTAACCGCAATAAATGTGAATTTTGCGTCACAGAGATCACTTACCTGGGGCACACCTTTAGTGTCGAAGGCATGAAGGTAGATCGAGCAAAGTTAAGGTTCATCACAGAGATGCCTAGTCCAAATGATCGGCAAGCGCTGGAGAGATTCCTCGGTATGGttaattatgtaagtaaattTATTCACGGCTACGCCGAAACGGTAGGTCCTTTGCGCAACCTACTCAAAAAAGACGGTGAGTGGACCTGGAGAGTATGCGAGGAGCGTGTGGTGAGCTCACTAAAGAAAGCGCTGTGCTCTGCCCCAGTGCTGGCGCTATACGTGGCGCGCGAGCCTGTGTTGCTGTCTGTGGACGCGAGCTCGCGAGCGCTCGGCGCCGTGCGGCTACAATGTGGGCGGCCGGTTGAGTTTGCGTCGCTTACACTAACTGACACGCAGCAACGCTACGCTCAGATAGAAAAGGAAATGCTTGCCATCGTTTTCGCTTTAGAGAGATTCCACCAGTACATCTTCGGTAAGAGCGATGTCACTGTGGAAACCGACCATAAACCGCTTGAGGCGCTCTTCAAAAAGTCACTCGACTCGGTTCCGGCCAGATTGCAGCGTATGATGCTTCGTGTTCAACGATATGATTTTCAGGTAGTTTACAAACCGGGAAAATATATGTACGTTGCAGACACCCTTTCGCGAGCACCCTTGCCGGAGCGCATGCTAACTAAGCTGGCCAAGGAAATCGAGGAGCAGAGCTGCTTCCTGTTACAGAACGTGAGAGTCAGTAGTGAGCGGTTGAGGGCGATAAAAGAACACACGAGTAATGATAGCGAGTCTAAGATTTTAATAGACTACATACTGCACGGATGGCCTCTAAATAAGTACCAAACCTTAGAACACATACGCCAGTATTGGAGCTACAGGGAGTGCTTCGAATATGTCGATGGCGTAATATTCTGcaataatttagtttttattccaCATGGACTGCGGAGCGAAATGTTAACGCGTGTACACGAGGGGCATCTCGGGATCGACCGGTGCAAGCGACGGGCACGAGACGTGATGTTCTGGGCGGGCATGGCGCGCGACGTCGAGCGCGTAGTGCGCAACTGCCGCGTGTGTGCTGAACACGCAGCGCGCCCCATGCGCGAACCCATGATCCCTCACGACATTCCACATTTACCTTGGACGAAGCTGGGTTCTGACATATTTCAGTATTCTAATGGATATTACTTAATAATAGTCGATTATCTTACGAACTATGTAGAAGTCTGTCCACTTAAAGGCATAACATCTAAACAGGTGATAACAGCTATGAAGGATCAGTTCGCCAGACACGGTATTCCCGAAGAGCTTATTACTGATAATGGACCAGCTTACGCGGCCAAAAAATTTAGAAGCTTTACGCAGGCCTGGGGGTTCAAGCACACCACCTCTTCTCCTAATTATGCGCAATCTAACGGTAAAAGTGAGCGCGCCGTACGCACGGTTAAAGAGttactaaaaaaaagtatagattCCAATGCAGATTTTTACCTGGCTTTGCTCAATTATAGGTCAACCTCGAGAGATGGCATAGCGAGTCCTGCACAACTCCTAATGGGTCGAAGGCTCAACACGCGCTTACCTTCGCACCCCGAGAAATTAAAGCCAGACAGAGATAACACGGCCGACCTTCAAAATATTTTACGCAATCAAGAAAGGAGCCGTTTGCAATACGATAGAACCGCTCAAGCGCTCCCGCAGCTGGAGCTCGGTGACGAGGTGGTTGCAATGGACGGCGCGACGCGTCGTCACGCGCGAGTCTCCTCACGCGCTCCACAACCGCGCTCCTATTTTGTCACTGATGACTCAGGAAAGGTTTTGCGTAGGAATAGGAGGCACCTCGTTAAACTCCCTGAATCTCTGTCTCTCACGGCACCGTTAAATGAAACAGTTCGCGATGATAATACGAGCTGCGAGGACTTGTCCGGAGAACAATCTGAATTATACAGGTCATGCACAAACACCGACGATGACACGGATCACGATTTTTCACCGGACAAATCACCGAATCACTCCAATCCATATTCTGGATGGGTTGCTGCAAGAAAagctaaaataaagttaaaacaaataaAGGCTAGAAAGGAGCTGGTGGGGCGCCGCGTCTCGGAGCCCTACGTGTCCGCGCGGTACAGATGCGAGGTGTGCTACACCGTGTACAAGTCCGACAAGCTACTGCAGTTCCATATGAAGTGGCATGATCCGTGTTCTGCCTTCGTGTGCGATATCTGCGCGATGCGATTCTCAGCGCGAAAGGCGCTCCACTGCCACAAGGCGAAGGCCCATCGCGGCCGCTTCCAGTGCAAGCTCTGCCCACTCATCACTTACTATGGGGAGGCGATGAAGGCTCACTTTCAGAAGCATCAGGGCAAAATATACAAATGTCACTGTAATCGGGTTTTCAATCACATATCGACATACTTCACGCACAAGCGCTTAACGCACGCGTCTTCCCACGTGTGCGTGACGTGTGCGCGCACCTTCGTCTCCGAGATTGGGCTGTTAAACCATCGGTTAAGAGCGCATCAGAGCAAGTGTAAAGAGGACAGCGAGGGTACCGCGCGATGCGAGGATTGTAACCTCACGTTCGCGAACCAACAAGTGTACACTGTGCATGTACTGAACACACACAAGGACAAAGCTAAAGATATCATCGGATGCCCGTACTGCGGTCTGTCGTTTGATGATCGTGCGCAGCTGAAAGCGCACAAGAAACAGAACCATCCGAAGAAAAAGGACACTAATGATATCATCAAATGCAAACTGGGCCGCGCGTGGAGACGCCGGCACTACTTTGCGGAGCACCCTCTAGTGCCGTACCTAGAGGAGGTGAGCGATGCCAAGGTGCACGTTTGCGACCGCTGCGGGAAACGATTTACTAATTCCTGCGTTATGAAGGATCACATGAACTCGCACACTGGTCTCAAGCCGTATTCGTGCGGCGTGTGCCCCGCGGTGTTCAGCTCGGCCGTGGCGTGCACGCAGCACGCGACGCGACACGCCCCTCCGAGCCTCGCCTGCCCGCACTGCGGGAGCCTCTTCCGCACCTCGTCTAACCTCGTCGTGCATATGAGGAAGCACTCAGGCGTCCGTCGGCACGCGTGCGAGACGTGCGGCAAAGCGTTCCTGCATCGCGCGGCGCTGCGCGAGCACGTGCGCGGCGTGCATAGGCACTTGCGCCGCACGAGGGGAATCAAAAACACAGACATTAAACCATAG
- Protein Sequence
- MCPARKYNKVYEVNEDSDNDGLGKLPGRYKIPLETDASPCICPVRKIPIGVRDQLQKELARMEELEVIRKVTHPTSWVSGIVIVAKKDASIRVCLDPRPLNKVIRRQHYPLPTITEIATKLRGARYFSKLDAKSGFWMVQLDDASADLCTFGTPFGRYQYLRLPYGINSASEVFHAKVRQLLEDLEGVDSFVDDVIVWASTKEEHDRRLTCLLDRARSVGIKFNRNKCEFCVTEITYLGHTFSVEGMKVDRAKLRFITEMPSPNDRQALERFLGMVNYVSKFIHGYAETVGPLRNLLKKDGEWTWRVCEERVVSSLKKALCSAPVLALYVAREPVLLSVDASSRALGAVRLQCGRPVEFASLTLTDTQQRYAQIEKEMLAIVFALERFHQYIFGKSDVTVETDHKPLEALFKKSLDSVPARLQRMMLRVQRYDFQVVYKPGKYMYVADTLSRAPLPERMLTKLAKEIEEQSCFLLQNVRVSSERLRAIKEHTSNDSESKILIDYILHGWPLNKYQTLEHIRQYWSYRECFEYVDGVIFCNNLVFIPHGLRSEMLTRVHEGHLGIDRCKRRARDVMFWAGMARDVERVVRNCRVCAEHAARPMREPMIPHDIPHLPWTKLGSDIFQYSNGYYLIIVDYLTNYVEVCPLKGITSKQVITAMKDQFARHGIPEELITDNGPAYAAKKFRSFTQAWGFKHTTSSPNYAQSNGKSERAVRTVKELLKKSIDSNADFYLALLNYRSTSRDGIASPAQLLMGRRLNTRLPSHPEKLKPDRDNTADLQNILRNQERSRLQYDRTAQALPQLELGDEVVAMDGATRRHARVSSRAPQPRSYFVTDDSGKVLRRNRRHLVKLPESLSLTAPLNETVRDDNTSCEDLSGEQSELYRSCTNTDDDTDHDFSPDKSPNHSNPYSGWVAARKAKIKLKQIKARKELVGRRVSEPYVSARYRCEVCYTVYKSDKLLQFHMKWHDPCSAFVCDICAMRFSARKALHCHKAKAHRGRFQCKLCPLITYYGEAMKAHFQKHQGKIYKCHCNRVFNHISTYFTHKRLTHASSHVCVTCARTFVSEIGLLNHRLRAHQSKCKEDSEGTARCEDCNLTFANQQVYTVHVLNTHKDKAKDIIGCPYCGLSFDDRAQLKAHKKQNHPKKKDTNDIIKCKLGRAWRRRHYFAEHPLVPYLEEVSDAKVHVCDRCGKRFTNSCVMKDHMNSHTGLKPYSCGVCPAVFSSAVACTQHATRHAPPSLACPHCGSLFRTSSNLVVHMRKHSGVRRHACETCGKAFLHRAALREHVRGVHRHLRRTRGIKNTDIKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -