Ptra026636.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004350.1:21222431-21224209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00034 0.033 15.7 3.6 2 23 275 297 274 297 0.96 2 10 0.0062 0.61 11.7 0.8 2 21 303 322 302 323 0.93 3 10 9.2 9e+02 1.8 2.2 1 22 345 366 345 367 0.74 4 10 7e-06 0.00069 21.0 0.6 1 23 373 396 373 396 0.97 5 10 0.061 6 8.6 3.2 2 23 404 425 404 425 0.97 6 10 9.2e-06 0.0009 20.6 0.5 3 23 432 452 431 452 0.97 7 10 5.5e-05 0.0054 18.2 1.1 1 23 458 481 458 481 0.95 8 10 0.0089 0.88 11.2 1.1 1 20 488 507 488 510 0.93 9 10 1.4 1.3e+02 4.4 0.2 3 23 517 537 515 537 0.93 10 10 7.7e-05 0.0076 17.7 1.4 1 23 542 565 542 565 0.98
Sequence Information
- Coding Sequence
- ATGGGAGAAGAGAAGGAAGTTGCTATCTGCCGCGTATGCTTGAATTATGATTTTGATATTCCTAGTAAAAGTCTATCTTTGTTTGAGGAGTACAACGACTGCGTAATCtctgaaaaaataaatgtactcACGAACGTCGGCATCAAGGCAGGCGATGGTTTGCCCGACAGGATTTGCCCAGCGTGCCTGGCAGAGCTCGAAAGTGCCTACAGTTTCAAtgtaaaatgtgaaaaaacaaaCGAAATCCTACTGTCTGCGGTAACTTATGATCCAATAAATGTTGAAAACTTCAATAACTCGAGCCCTATGAAAGAGGAGGAACTAGTAGATAAAAACTGTGACATAGTCGACCTAGAAAAAGAGGATGTCTTAGAAAATGATAATACTGACTCTGATACAGCCGTACCACTTAAAAAAGAAAACCTAAATGATGGAAACGGCTTAGTTAATGATAATTCAGACTATGATTTAGACCTACCTACTAAAAAAGAAGATCTAGATGCAATAACCCGTCCTAAGGAAAATAAAGACCTAGAAGGCAATATGGTAGGCATAGCCCAACCTATCTTAGAGGAATGCCAAGAAGACTCATATCACTTTTACTATGAAGATGACAACTCTGTCATAGTCCCTTCAGTAAAAGTTGCAGGCCTAAATGATGCCAACTTTAAAGTAGCTCAGCCTCAAGAAATGAAAAATCTAGAAGGTAATAATATGGACATAGCTGAAcctatcaaagaggataaccAAGAAGATTATGAACATGTGGAGGACCACAATATGACAATGCCCAGGCCAAGTAAAGCTAtagatttgaaactagaatgcCATGATTGTGGAGGGTCCTTCAAGAGCAAATGCAAGCTCCGTGTGCACTGGAAAAGGGTACATTTGCTTGAGAATATCAAGTGTCCCAGTTGCTTGAAGAAGTTCAAATCATATGAAGCCTTAAATTCACACAAGAAGAGAAAACTGAAGAGCTGTGTTACTGCCAGTAATGCCCACATCGAAGGAGAGGGCAAGAATAGAGTATTTCACTGCAAAAAATGTGACTATAAGACACGGATAGTTCAGAGATTTGTAGCACACACAGTCTCACATACTGGTGAGCGATCATTTCAATGTGACATGTGCCCACGCAACTttacacaaaaatattcattaatagGACACATGGAAAGTACACACAATATGTACAGTCACGCAGGAACCTGTCACTTCTGTGGAAAATATATCAAAGGCCTgcgaaaattaaataaacatatatacaGACACAAACATGCTCATAATCCTTGTAAGATTTGCAATGTTGTGTTAACAAGCAAATCTAATTTGAAGATTCATATGCAAAGGCATTCGGATATCAAAGCGTATGCTTGTGATGTGTGTGGTTTGTCATACAAAACAAGCTCTGGCCTCACTACTCATAAGAAGCACGTTCATCTCAAAACTGCAACAGTCTACAAGTGTGAAATATGCAATTACACTACTCGATCTTACAGTGGAATGGCAAAGCATAAACCAAAGCACTCTTATGATAACATTGCTTGTGATATTTGTGGTTTCTTTGTAGATAATGAACGGCAATTAGCATTTCATAAGAAACGGCACACTGATAAGAGATATCAGTGTGCTGAGTGTGAGAAGAAATATTACAAACGGGATAGTCTTAGTTCACATTTGAGGAAGGTTCATGGGATTGGGTTGTATATGAAGGCTGGTAATGGTAGCAGTGAGACTATAAGAAAGAAAACTAATTGTAATACTAAAAATAGTTAA
- Protein Sequence
- MGEEKEVAICRVCLNYDFDIPSKSLSLFEEYNDCVISEKINVLTNVGIKAGDGLPDRICPACLAELESAYSFNVKCEKTNEILLSAVTYDPINVENFNNSSPMKEEELVDKNCDIVDLEKEDVLENDNTDSDTAVPLKKENLNDGNGLVNDNSDYDLDLPTKKEDLDAITRPKENKDLEGNMVGIAQPILEECQEDSYHFYYEDDNSVIVPSVKVAGLNDANFKVAQPQEMKNLEGNNMDIAEPIKEDNQEDYEHVEDHNMTMPRPSKAIDLKLECHDCGGSFKSKCKLRVHWKRVHLLENIKCPSCLKKFKSYEALNSHKKRKLKSCVTASNAHIEGEGKNRVFHCKKCDYKTRIVQRFVAHTVSHTGERSFQCDMCPRNFTQKYSLIGHMESTHNMYSHAGTCHFCGKYIKGLRKLNKHIYRHKHAHNPCKICNVVLTSKSNLKIHMQRHSDIKAYACDVCGLSYKTSSGLTTHKKHVHLKTATVYKCEICNYTTRSYSGMAKHKPKHSYDNIACDICGFFVDNERQLAFHKKRHTDKRYQCAECEKKYYKRDSLSSHLRKVHGIGLYMKAGNGSSETIRKKTNCNTKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -