Ptra011546.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004342.1:12496839-12509135[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.7 3.6e+02 3.0 0.2 9 23 201 216 193 216 0.81 2 11 3.3 3.3e+02 3.1 0.2 6 23 226 243 224 243 0.93 3 11 0.029 2.8 9.6 3.6 1 19 277 295 277 300 0.95 4 11 0.0018 0.17 13.4 0.2 3 23 335 355 333 355 0.96 5 11 1.1e-06 0.00011 23.5 2.5 1 23 363 385 363 385 0.97 6 11 0.002 0.2 13.3 2.3 1 23 394 417 394 417 0.96 7 11 0.00048 0.047 15.2 0.2 1 23 423 445 423 445 0.97 8 11 4.6e-07 4.5e-05 24.7 3.7 1 23 451 473 451 473 0.98 9 11 0.00046 0.045 15.3 1.0 1 23 478 500 478 500 0.98 10 11 3.5e-06 0.00035 21.9 4.2 1 23 506 528 506 528 0.97 11 11 0.0012 0.12 13.9 2.0 2 23 535 557 534 557 0.95
Sequence Information
- Coding Sequence
- atgGCCATAAAAGACCTATGTAGACTTTGTGGCAAAGAAGATGTGTTCTCCAAGGATTTACTACTTGAAAGCAACCAAGGTGTTAGAAAAATCATacaagattttataaaaatctcTATATATGAAAGTGATGAGTTACCTACGCGAATATGCCTGAACTGTGAAGAGAAGATGATTACATTTCAGCTGTTTGTGTTGGAATGTTACAAAACTCAGGAGCTGTTGCAGAAAACATGGAAAGATGAAAATGATGATCTTCTAATAAAACGAGAATTCAGTACAAATGTCGTAATAGAATCTGTAATAAAATCTGAGGTAAAAGATGAAATGACAGCTGAGGAAATTGTcaGTGCACTGAACAATGAAGAAGAACTATCTGATATTGTAATATTTGGAAATGATAACAATGAACAAGATtaccatgatgatgatgatgatctggATGATGTTACAATTGCtacattaaaacaaataaaaactgatcaaattaaaaaactatCTGAACATAATGTTGATATAGATACGCTCAATCAAATTCTTCATGCTGGTGCATTTAAAGTTAAAGATCTTGTCAAATTTGAATGTATTTTTTGCGCGGATAAATTAAAATCATGGTCCAGTTTGCAAATACATTATGCCAAACGTCACAAAAGTGAAGCAGTGGTGATGTGCTTGTGTGGTtatgaaatcaaatcaaaaagtgTGCTATACAAACATGTGTCAGAACATAAGTTAGAAAGTAGAAAATTAAGGAAAGGAAATGCAAGTGAAGATGACAAACAGGAAGACATCAAATATCCAAATCTGAATGTTAAAAATTTTGTTGATTTCACTTGTGATGAATGTGAAGTTAAATGCACTAGCTGGTATAGTCTGAAGGCTCACTGCGAAGAAACTCACAATATCGCGCCTGTTGTTCAATGCAAATGTGGAATCATCCTTAAATCTAAATCCGTTATGTACAAACACATACATGATCACAAAAATCCTAATATTTTGGCatgtgATAAATGCCCGAAAGTATCTAAAACCATTGCAGCATTAAATAAGCATAAATTGAGACATATTCCGAAATCGGAACGGAAGTTTTGTTGTTCTGGATGTGATAAAGTATTCACTACAAAAGATGCTCTAAAATCTCACGAAAGATCTCATATTCCGATAGAAAATAGAAAGATTTACCATTGCGACATTTGTAATTTAAAATTCACGACGCGTTCGTCCGCTTCCTCGCACAAGAAAGTGGTGCATGAAAAGGTAAAGGGCTACATATGTGACCTCTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATCCACAGCGATGACAAACCCTTCGTCTGCAATAAGTGTTCTAAGCGTTTCAAAACCTACTCCAACCTAAAAACTCACATGGACACTCACGAGGACACGGCCTACGAGTGCTACATCTGTCGACGCGTGCTGAACAGTCGACGCACGCTGCGCAAACACTTGCTGGTGCATGAAGACAAGTGCCGGCATGTCTGTTCATATTGCAATAAGGCTTTTAAGAGAAGACAGACTTTGAAGGTGCACATGTATACGCACACAGGCGATAAGCCCCTCTCTTGCAAATGGTGTGAAGAGAGGTTCGCATACGCGTCTACATTACGTTCACATCGGCTACGTTGCCACCCTGAAAAAATGGCGAACCAATCTGAATACGAACCGCCTTATCTCGTCGTGAATCATAATTACGTCAAAAACGACGTCCCGGTAGCCAAAAATGAGGTGGAGACTATCTTAGGTTAG
- Protein Sequence
- MAIKDLCRLCGKEDVFSKDLLLESNQGVRKIIQDFIKISIYESDELPTRICLNCEEKMITFQLFVLECYKTQELLQKTWKDENDDLLIKREFSTNVVIESVIKSEVKDEMTAEEIVSALNNEEELSDIVIFGNDNNEQDYHDDDDDLDDVTIATLKQIKTDQIKKLSEHNVDIDTLNQILHAGAFKVKDLVKFECIFCADKLKSWSSLQIHYAKRHKSEAVVMCLCGYEIKSKSVLYKHVSEHKLESRKLRKGNASEDDKQEDIKYPNLNVKNFVDFTCDECEVKCTSWYSLKAHCEETHNIAPVVQCKCGIILKSKSVMYKHIHDHKNPNILACDKCPKVSKTIAALNKHKLRHIPKSERKFCCSGCDKVFTTKDALKSHERSHIPIENRKIYHCDICNLKFTTRSSASSHKKVVHEKVKGYICDLCGYACGTNGELRQHRAIHSDDKPFVCNKCSKRFKTYSNLKTHMDTHEDTAYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCEERFAYASTLRSHRLRCHPEKMANQSEYEPPYLVVNHNYVKNDVPVAKNEVETILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119862;
- 90% Identity
- -
- 80% Identity
- -