Ptra010570.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004341.1:31061077-31066847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.01 0.98 11.1 4.8 1 23 157 180 157 180 0.95 2 17 9.7e-05 0.0095 17.4 1.1 1 23 189 212 189 212 0.97 3 17 0.0044 0.43 12.2 0.5 2 23 225 247 225 247 0.97 4 17 0.00023 0.022 16.3 1.8 1 23 256 279 256 279 0.98 5 17 0.0004 0.039 15.5 1.1 2 23 292 314 291 314 0.96 6 17 0.0013 0.13 13.9 0.7 2 23 341 363 340 363 0.96 7 17 3.6e-05 0.0035 18.8 0.9 2 23 373 395 372 395 0.96 8 17 0.33 33 6.3 1.2 3 19 401 417 399 419 0.94 9 17 0.00062 0.06 14.9 0.5 2 21 425 444 424 447 0.94 10 17 0.0022 0.22 13.1 0.4 3 23 457 478 456 478 0.96 11 17 1.8e-06 0.00018 22.9 3.5 1 23 483 506 483 506 0.96 12 17 0.0078 0.76 11.4 5.1 1 23 517 540 517 540 0.91 13 17 0.88 87 5.0 4.0 1 23 558 581 558 582 0.92 14 17 1.1 1.1e+02 4.6 0.2 2 23 588 608 587 608 0.84 15 17 0.38 38 6.1 2.5 2 23 614 635 613 635 0.97 16 17 0.0047 0.46 12.1 0.2 1 23 701 723 701 723 0.97 17 17 0.21 21 6.9 2.0 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- ATGTCGCTATTAACTGAAAGcgaaataaaattagaaaatgaTGAACGGAAAGACCCCACGTCCTTCCTACCAAAAGAAGAAATGTGCTATgagattaaaaagaaaaaaaagaagaagaagaagaagaaaaagcaAGAGGATCCCTTTAAAGATGTGGAAGAGAAATTTAGCATCAGCCGGATACCGGATATAACGGCATTGGATCCGGATATAGGATGTCTGGATCCAGAAGTTACTATTAAGGTTGAGGATATAGAGGTGGATTTGAATATTGCTGATTTCAACAATGATGACGGCCTCGTAATGGACGGCTACGACGACGACTGCCAAATGGAACCATCCGTGAAACTCGAAGACCAGAACCGAGATGCTGTTCTACTAACCTTCCAAAATATTATCAGTGATAATATTATCACTAACAAGCTCCTTAAAACTGAGAAAATTACTTACGAAAAGTCATCCGAAACCCATTTCTGCCAAGTTTGCCATCTTGTGTTCAGAACGGCGAAGACCTTAGATATGCATCAGAAAAGAACTCATAAACGATTTAGAAAATCATTCGCACATGTTTGTAATGACTGTGGGATGTCTTATGAGTTTAAGAACAGCTTAGTAGCTCATATTAAAAGGAAACACGGACCCAATGCAAGCAAAGATGATATGATAGAAAGAACTTGTGATGTCTGTGCTTTAGTCTTTAAAGGCTCAGCCAGGCTACGGATGCATATGAGGAGAAAACACGGGTCTTATGAAGATACCTTTAACTTTGAATGTGATTACTGCGGTCTGACCTACGATAAACAATGCAGCTTAATTGTACATGTTCGAAGAAAACATACACACAAAATTAAACCGAAGAATAATCTTTGGTTGACTTGTCCGTTCTGTGCTAAAACTTTTAATAAAAGAGAAACTTATGCTAGACATATACAGAGAAATCATAGAGTTAAAGACGATGAAACTAGGAAGGAAGAAGACGAATTTAGAAAGACTTACATCAATGAGAAAACTGGTGAACTTTCTTGTAATCAGTGTGCGGCTAACTTTTCTACGGTCAACTATCTTAAATGGCATATGAGGAGAAAACATAACGCTAATATAGCAGATTTTAGACTAAGATGTAAGATCTGTGATCTGTCTTACGCAAATACTGAAAGTCTTAAGAGACATGTGAGAAGAAAACATGATAAGGGAACTTTTTGTTACGAGTGCAATCGACAGTTTCCTGACCGGGATACATATTTAACCCATTCTCACGCTAAGGATGTTAAAGAATGTACTATTTGCGGGTTAATTTTTGCAAATCAAGGTGGCTTGGCTAAGCATTTAAGGTGTACCCATAAAATAGATACTGTTAAAACTGTTTTCTGCCCAATTTGTAACCAAGGTTTCGTTAACAAGCGGCAGTTGAAACCTCATTATAACCGTGTGCATTTAAAAGTTACTTACACATGTAAGACGTGTGGCAAAGTTTTTAAGACTAGAGAGTATTATAAACGGCATATGTCATTGAAACATGCAACGGATCCACCAGTGGAGCCGGTGATGCATCAGTGTGAGAAATGTCCGGAGAAATTTAAGGATGAGTTTCAACTTTGTAAGCATAATAACTTTGCCCATGGAGATCCACTCCCTCTAGTTATTAAAAAAGAAGAGGACTTCAAAGATGTATTTAAATGCACGAAATGTTCAGATCAGTTCGAAAGTTGGGAGTTTCTACGTACCCATTTCGAGCAATTCCATCACATGACCGAAGAAGTCCAATGTCAAATGTGTGGGGATTTATTGAGTAGAGGAGAATTAGTTAAACACATGAAAAGCCACGACGAAATCGAAGTACAATGCAGATTTTGTGAGTTTAAAAGCAAAAACAAACTTAGTATGACACAACACATGCTTAGACACAAGAATGCAGCATCTATTAATTGTGAATACCCAAATTGTAGGTATAAAACGTTTTATGAGGAAGCAATGGTTAAACACAAGAAACGGCATCAAGATCAGGGTGTTAAACTGCAGTGTGCGAGCTGTCCGTTCCAAACTATGAACAAATACATTTTAAGGTACCACGAGGAGGCGCATGAGACGGGGAAGAAACGTTACCAGTGTGATAAATGTGATTATGCTACGATACTCCCAGCTAATTTAGTCCAGCATAAGTATAAGCATTCCACGGAGAAGAGGTTTAAGTGTGAAGTGTGTCCGTTCGCAACAAAGTATAATACTTCATTGCGGTTTCATGTTAAGAAGAAACACTGTGATCTTCCAACTATGAGTTAG
- Protein Sequence
- MSLLTESEIKLENDERKDPTSFLPKEEMCYEIKKKKKKKKKKKKQEDPFKDVEEKFSISRIPDITALDPDIGCLDPEVTIKVEDIEVDLNIADFNNDDGLVMDGYDDDCQMEPSVKLEDQNRDAVLLTFQNIISDNIITNKLLKTEKITYEKSSETHFCQVCHLVFRTAKTLDMHQKRTHKRFRKSFAHVCNDCGMSYEFKNSLVAHIKRKHGPNASKDDMIERTCDVCALVFKGSARLRMHMRRKHGSYEDTFNFECDYCGLTYDKQCSLIVHVRRKHTHKIKPKNNLWLTCPFCAKTFNKRETYARHIQRNHRVKDDETRKEEDEFRKTYINEKTGELSCNQCAANFSTVNYLKWHMRRKHNANIADFRLRCKICDLSYANTESLKRHVRRKHDKGTFCYECNRQFPDRDTYLTHSHAKDVKECTICGLIFANQGGLAKHLRCTHKIDTVKTVFCPICNQGFVNKRQLKPHYNRVHLKVTYTCKTCGKVFKTREYYKRHMSLKHATDPPVEPVMHQCEKCPEKFKDEFQLCKHNNFAHGDPLPLVIKKEEDFKDVFKCTKCSDQFESWEFLRTHFEQFHHMTEEVQCQMCGDLLSRGELVKHMKSHDEIEVQCRFCEFKSKNKLSMTQHMLRHKNAASINCEYPNCRYKTFYEEAMVKHKKRHQDQGVKLQCASCPFQTMNKYILRYHEEAHETGKKRYQCDKCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100022;
- 90% Identity
- -
- 80% Identity
- -