Ptra034850.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- ken
- Assembly
- GCA_963924445.1
- Location
- OZ004356.1:12023639-12038921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1.3 10.7 1.8 2 23 73 94 72 94 0.96 2 12 0.0098 0.97 11.1 1.1 3 23 102 123 100 123 0.94 3 12 0.5 50 5.7 0.1 2 23 131 153 130 153 0.88 4 12 0.0017 0.17 13.5 4.0 1 23 159 181 159 181 0.96 5 12 2.4e-06 0.00023 22.5 4.2 1 23 187 209 187 209 0.96 6 12 0.007 0.69 11.6 0.2 1 19 215 233 215 236 0.94 7 12 0.031 3 9.5 2.7 2 19 256 273 256 278 0.92 8 12 0.00015 0.015 16.8 3.2 1 23 564 586 564 586 0.98 9 12 1e-06 0.0001 23.6 3.2 1 23 593 616 593 616 0.98 10 12 0.0027 0.27 12.9 4.3 1 23 624 647 624 647 0.95 11 12 0.00015 0.014 16.8 2.6 1 23 653 677 653 677 0.98 12 12 2.8e-05 0.0028 19.1 0.7 1 21 683 703 683 704 0.95
Sequence Information
- Coding Sequence
- ATGGATTCTAACTTATCTTATTTTAGTTTACCAtttgtggacacCACAGATCTTGATTTTGGAAAGATCAGGGGCCAGGAGTGCGAATACGATGACCTGCACCCTACACTACCTGCACATGGGTCTCTACTGGGCGCAGACGATGATGTTTTGGCACAGTTTCTCTCGGGCGACGATCCACTCGAGGAGCCCGACCTCAATGGCCCCACTACATTGCACTGTGAGATATGTAGGAAGCAGTTTGATAACGCAAAGAAGTACTACGGCCATCTGAGAGTACATTCGAAAGACAATCTATGGAACTGCGagAAATGTCCCAACGAGAAGTTCTCAACTAAACAGCAACTTATGAAGCATACCCTCTCGCACAAGCCTCTCGAGAAAGAATGGCGCTGTCCTCAGTGCGAGATGGCCTTCGAAGCATTGTGGAGACTGCAGCAGCATCTGTTTGCTAAGCATTTGGATTACAGgcCGCACAAATGTGATATCTGTGAAAAGACATTCCACAAACTCTCAGATTTGGACAAACATAAGGATGTACATGAAGCAATAAAGAAGCATGCATGTAGTGTTTGTCAAAAGAAATTTGTTGACAAATCTAATTTAAGAAGGCACATGCATATCCACGGGGGCGAGAAACCATACCCCTGTGCTGGGTGCGGTCATCGCTTTAAACAGataGCAACAATGAAACGGCACAGCTTAAACTGCCCCATGGTACAACACAATCAAAGTGAAGCAAAAATGAAATCGTACCGGAAGAACTACTGCCATGTCTGTGGATTGACGTTTCAATATAAAAGTTCTCTATTAGAACACTGTGTGAGGGAGCACTCAACGAATCCACCTGTAGAGCCTCCAGCACCGCCTAAAGAGGATAAATCCAACCAGCTGCATGTCGACACAAACCGAACGGTCGACAACATAGTCGACGACATCCTCTCCGCTGAAGACGACTACATGGCCATGTCGACACAAAACGACCTCATCAACTACCCTACAGAACATAACCCGGACAACTTAATGCAGATAGAACTCTTAAAAGAAATGAATCAAATGCACAACATGCATATCCTAGATGACGAATTACTATACAACGATATAGACTTAGATAGTTTCCAAACGATGTGCAATAATATTGACTGTGAACGGAACGAACTATTCGATCTGAGCGATCAGACCGATATCTTGAACGGGTCAAGAAATCTTGATCAGGATTTGATGAACGCGTTCGTCAGAGGTATCGACGTTAAAGATGATTTGCCAAAGGAGTTTCTAAACCCACCAGAGATGAATACTAAAGTGAACGAATTTTTAGTCAATCCTCCGGTCTCAGTGAACGAGTGTGCAACTATTTTTGAAAGTGATGTAGATTTAGAAGCGAGTACAAATTTAGCTGCGAATCTGAACCAGCTGATAGGTGAGAATACGGTTCAGTATATATCTACGGAACACGACGATACGTTTATAATTAGTTTGAATAGTGAGATTGATGCGGAGCAACTTACGGATATGTTGAATATAGGTGTTGAGACAAAACCTATAAAAACTGAACCTAGATTAAATATAGATATACCTGAGGATAAACCTATTGAGTTGGATATACAACCGGATACTTTAAATACAGTAATGGAGGCTAAAGAAGAAAAAAACGAACCGCCGAAGAAGAAAGTTAGAACGAGAGTTATGTATGTGTGCTTGAAATGTAAGAAGATATTTAAGACGAAGAACAATTATACTTCACATCGAGggACACACGACGCAGATTTGCAGCAGTTTCAGTGCAAGGTTTGTTCGGAAAGGTTCAGCTATAAGTCCTCCCTGAACAAGCACATGAAGCGAATGCACACGCCAATCGTCAAACCGGCACATACCTGTTACTTGTGTGATAAGTACTACACCACAGCTTGGCATCTCAAACAACACACAGAACGAGATCACAACTTGCTTCAGCCATATCGATGCGATGAAAAAGATTGCGGGAAGAATTTCTTCAGAAAATACGATCTTGATACTCATAAACGATACCACACTGGGGAAAGGCCGTACGTGTGTTCGGTTTGCAGCCGCGCGTTCAAGACCACGTCCCACCTCGCGCGGCACGTCAAACGCGTCGATTGTGCCAAACTCATCAAAAATAATGGAACTGACAAGAAGCTTAAAACTGACAGGAAACTGAAGAGCGCCAAATCACCCGTAGCTACTGTCGCCGCACCTGTCAAttga
- Protein Sequence
- MDSNLSYFSLPFVDTTDLDFGKIRGQECEYDDLHPTLPAHGSLLGADDDVLAQFLSGDDPLEEPDLNGPTTLHCEICRKQFDNAKKYYGHLRVHSKDNLWNCEKCPNEKFSTKQQLMKHTLSHKPLEKEWRCPQCEMAFEALWRLQQHLFAKHLDYRPHKCDICEKTFHKLSDLDKHKDVHEAIKKHACSVCQKKFVDKSNLRRHMHIHGGEKPYPCAGCGHRFKQIATMKRHSLNCPMVQHNQSEAKMKSYRKNYCHVCGLTFQYKSSLLEHCVREHSTNPPVEPPAPPKEDKSNQLHVDTNRTVDNIVDDILSAEDDYMAMSTQNDLINYPTEHNPDNLMQIELLKEMNQMHNMHILDDELLYNDIDLDSFQTMCNNIDCERNELFDLSDQTDILNGSRNLDQDLMNAFVRGIDVKDDLPKEFLNPPEMNTKVNEFLVNPPVSVNECATIFESDVDLEASTNLAANLNQLIGENTVQYISTEHDDTFIISLNSEIDAEQLTDMLNIGVETKPIKTEPRLNIDIPEDKPIELDIQPDTLNTVMEAKEEKNEPPKKKVRTRVMYVCLKCKKIFKTKNNYTSHRGTHDADLQQFQCKVCSERFSYKSSLNKHMKRMHTPIVKPAHTCYLCDKYYTTAWHLKQHTERDHNLLQPYRCDEKDCGKNFFRKYDLDTHKRYHTGERPYVCSVCSRAFKTTSHLARHVKRVDCAKLIKNNGTDKKLKTDRKLKSAKSPVATVAAPVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -