Ptra021474.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004347.1:22012938-22021210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.077 7.6 8.3 0.4 1 23 93 115 93 115 0.97 2 25 7 6.9e+02 2.1 0.1 2 23 141 163 140 163 0.94 3 25 0.41 40 6.0 0.1 3 23 187 208 185 208 0.93 4 25 0.017 1.6 10.4 0.1 3 23 216 237 215 237 0.96 5 25 0.0016 0.16 13.6 0.6 3 23 244 265 243 265 0.95 6 25 0.0069 0.68 11.6 2.7 1 23 271 294 271 294 0.98 7 25 0.0012 0.12 14.0 2.2 2 23 301 323 300 323 0.95 8 25 0.045 4.4 9.0 1.3 1 23 329 351 329 351 0.93 9 25 0.0026 0.25 12.9 0.7 1 23 357 380 357 380 0.88 10 25 1.1 1.1e+02 4.6 7.8 1 23 470 492 470 492 0.97 11 25 0.045 4.5 9.0 0.3 2 23 517 539 516 539 0.93 12 25 0.37 36 6.2 0.2 2 23 560 582 559 582 0.89 13 25 0.055 5.4 8.8 0.9 3 23 590 610 589 610 0.92 14 25 0.13 13 7.5 1.7 2 23 616 637 615 637 0.96 15 25 0.044 4.3 9.1 0.7 1 23 641 664 641 664 0.96 16 25 0.0014 0.13 13.8 0.9 2 23 671 693 670 693 0.95 17 25 0.0036 0.35 12.5 2.1 1 23 733 756 733 756 0.94 18 25 0.47 47 5.8 0.1 2 23 783 805 783 805 0.92 19 25 0.63 61 5.4 1.0 5 23 831 850 828 850 0.92 20 25 0.058 5.7 8.7 0.2 1 23 854 877 854 877 0.95 21 25 0.00056 0.055 15.0 2.3 2 23 881 903 880 903 0.92 22 25 0.93 92 4.9 0.3 2 23 909 931 908 931 0.88 23 25 0.0018 0.18 13.4 1.2 2 23 939 961 938 961 0.95 24 25 0.3 30 6.4 0.1 2 20 968 986 967 989 0.94 25 25 0.0087 0.86 11.3 0.8 6 20 999 1013 997 1015 0.93
Sequence Information
- Coding Sequence
- ATGACACGTTTAGGTGTAACTAGTTGGGAACCCACCGGAGAACCTAGAGGTGGCCAGAAAGCGAAAAAGCTATTGATTAAACCCACGAAACCAGCGCCGGTGTCTGTTCCGGCCCCAGTAGCAAGCCAACGAACAATCAGATCGACCCCCCGAGAAACTGTCCCTATGAAACCTAAAGGGTTATCAGCGAAGGAAAAACGAAACATCATCCTAAAAAACGTATTAGAGGTTCTGCTAAAGACGACTGTAATGCCCTTCCGCTGGCTCAAAAGCTCCTACCGCTGTTTCTACTGCTACGATATATTCCAAGAAGCGTCAGAGCTCAAGGCCCATCAATCCGCACACACAGATAACTCCGCCAAAGAGAAGGTTTTGACAACCTTCTGGGAACCTGTCGTTTACATCGATGTTTCCAACATGAAATGCAATCTCTGTACCGATGAAGTAACAGACTTGTACGATATGGTCGACCATCTTATAACGAAACATGGAGTGGAGTTCAATAAAGACGTCGGGGTATGTATGGTCCCGTTCAAGCTGAACAACTTAGACGTGAGCTGTCTCGCTTGCGGTGCCAGCTTTTACACTTTTGGACCCCTCCTGAATCACACGAACAAGGATCACAAAGGCACGTCGGCGATTCTTTGCGAAATCTGCGGTCAGAACTATAAAGATCAGAATATTTTGCGACTGCACATGAAAGCTGTCCACGACAATAGCGGAATGCTGTGTCCTGAATGCGGTGACAAGTTCGAAACGCGTTCCAAGCTAAAGACTcaccaaataaataatcacGGCTTAGAACGAAAGTTTAAATGCCTCGTCTGCGATCAGACGTTCGGTAGCCACTACAAGAGATCCAGACACATGGCGACCGATCATAAGAACAGGCAAGAGATCAAATGTCTGCACTGCCCTAAGACTTTTGTATTTAGGAGTATGATGATGACACATTTGCGAGATACTCACTTAAAAGTTCGCAATCATATCTGCGGCGTGTGCGGATGGAAAGCATTCAATAGCAATCGCCTGAAGAATCATATGTACAAACACAGTGGGGAGAAGAATTTTAAGTGCGATGGTTGCGACAAGGCGTTTACCACTCGAAAGATAATGAGGGCTCATTTTGCGCGGATGCACAAGGCTCCTCAGCAGGCCCCACCAGCCGTGCCTGTTATGCATTATAATGCTTATGGGGAACTGCAATATACCGACTCTTCTGAATCGTCGCAAGAAACATACACTGAATCGACTGAGTATTATCAAGTCAAGTCAGAAACAGACACGGAATCTGACGATCAGAGTGAAATAAAGGAGCCACCAGAGAATCTAGAGAAACTGAGAACCAACGTGAAGAACGTAGTCCAAGCGTCGACGGCCATGCCTTTCCGCTGGCTCGTCTCTGCTTTCAGATGTTTCTACTGCTACGATGTCTTCCACCACCAAGACGAGCTCAAATCACATCATATGCTCCACGATGATACTGAAATCGTGGACGCGGTGAACAAATTCTGGGATTCAGCTGTTTTTATAGATGTTTCAGTTCTAAATTGCAAGCTGTGCTCTAAAACTCTGAATACTATAGACGATTTGATTGACCATTTGATATATAAACACAAAATACCGTACAACAAAGACGTGGTTAGCTTCCAACCTTTTAAGTTGGATGATAAGCTATCGTGTGCTATTTGTAGAATGAAATTCGTGAATTTCGGTATGCTGCTCATCCATACGACAGCGAAGCATCAGCATAACGAAGATCGACTTTGCGATGTTTGTGGCAGAACGTTCAAACCACACCAGATGAGGATGCACTTAGCGAATGAACACAGAAGCAAGACCGTGAAATGCACGCTCTGCGAAGAGAACTTTAGCGTGCACACGTTAAGGACGCATATGACTCGTATACATAATAAACTGTTTAAATGCCAGATGTGTTCGGAGACTTTTGAGACGATTTATAAACGTGCGGTGCATCTCACTACCGTTCACAAAGGGAGAGAACCCGTGAAGTGTCCACAATGCCCTAACACCTTCTACTTCCAGAGCACGATGAGGAGGCATGTTAAACAAGTCCACGTGAAGGAGAAGAACGTTGAGTACGTGGCCTTGAAGAATGAACAGCAACTCGCAGCGTTGCTTATAACTATCATTCAAGACTCCACGATCATACCCTTCCGGTGGAAAAGAGGCAACTTTATGTGCTTCTACTGCCCCACCTCTTTCAACAATTGCAGAGCACTGAGAGACCACAATAATATCGGCCACGATGAAATCAATATCACTGATATCATCACGCGAGTTACATACAACGATCGGAGGATCAAACTAGATGTGGCCACTGCAAAATGCAATCAGTGTAACGAACCGCTCATAGACTTAGCGGATTTTATCGAACATATATACGAAAAACACGCTACGGTGTTCGATTCTGATATCGTAAAACATTTCACTTCCTACGCACTCTCAGACGATGAGATGAGCTGTATAGAGTGCGGGCAGAACTTCCAATTCTTTGGAACCTTACTCAGACACACCAATAAAAATCATCTTGAGAAGCATATGTGCGAGATTTGCGGACAAGGAGTCGTCGGCAAAGTCAACATTTACAACCATATGAAGCAGATGCACGCAGTCAAAGTCTGCAAACATTGCCACGAGACATTCCCAACACAATATGCGTTATTCCAACATGTGTTGGCTACTCACAAATCTGATAGTCTAAAATGTACTATATGCGGGGAAGTTCAGCTGAACCGCTATAAGATGAAACGACATATGGCCCTGGTTCACGATTGCAAGAACTCTCAGATAGTTTGCGAGTTCTGTACGAAGGTTTTTACGAGGAATAATAAATATGTCCAGCATAAACAACGCGTACATTTAAAATTAAGGAATATAACGTGTGATGTATGCGGGTACGCCGTGTATGACGATGCAGCGTTGAAGCTTCACATGGTGTGTCACAGCGAATCGAAACCATTCTCTTGTGCGTGCGGGAAAACTTTTAGGAGATCTAAAAATCTGTTAGTGCACGAACAACACTGTCCACAAAACGCAAGCAAAGTTTCTAGAGACATGGAGGTCCCGCCAAATACAAATTTAGATAAAAACTGA
- Protein Sequence
- MTRLGVTSWEPTGEPRGGQKAKKLLIKPTKPAPVSVPAPVASQRTIRSTPRETVPMKPKGLSAKEKRNIILKNVLEVLLKTTVMPFRWLKSSYRCFYCYDIFQEASELKAHQSAHTDNSAKEKVLTTFWEPVVYIDVSNMKCNLCTDEVTDLYDMVDHLITKHGVEFNKDVGVCMVPFKLNNLDVSCLACGASFYTFGPLLNHTNKDHKGTSAILCEICGQNYKDQNILRLHMKAVHDNSGMLCPECGDKFETRSKLKTHQINNHGLERKFKCLVCDQTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGVCGWKAFNSNRLKNHMYKHSGEKNFKCDGCDKAFTTRKIMRAHFARMHKAPQQAPPAVPVMHYNAYGELQYTDSSESSQETYTESTEYYQVKSETDTESDDQSEIKEPPENLEKLRTNVKNVVQASTAMPFRWLVSAFRCFYCYDVFHHQDELKSHHMLHDDTEIVDAVNKFWDSAVFIDVSVLNCKLCSKTLNTIDDLIDHLIYKHKIPYNKDVVSFQPFKLDDKLSCAICRMKFVNFGMLLIHTTAKHQHNEDRLCDVCGRTFKPHQMRMHLANEHRSKTVKCTLCEENFSVHTLRTHMTRIHNKLFKCQMCSETFETIYKRAVHLTTVHKGREPVKCPQCPNTFYFQSTMRRHVKQVHVKEKNVEYVALKNEQQLAALLITIIQDSTIIPFRWKRGNFMCFYCPTSFNNCRALRDHNNIGHDEINITDIITRVTYNDRRIKLDVATAKCNQCNEPLIDLADFIEHIYEKHATVFDSDIVKHFTSYALSDDEMSCIECGQNFQFFGTLLRHTNKNHLEKHMCEICGQGVVGKVNIYNHMKQMHAVKVCKHCHETFPTQYALFQHVLATHKSDSLKCTICGEVQLNRYKMKRHMALVHDCKNSQIVCEFCTKVFTRNNKYVQHKQRVHLKLRNITCDVCGYAVYDDAALKLHMVCHSESKPFSCACGKTFRRSKNLLVHEQHCPQNASKVSRDMEVPPNTNLDKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -